Gene annotation
Transcriptome id Sobic.003G419900.1
Synonym PSB28, Sb03g045320
Functional annotation photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed
UniProt C5XHQ4
Pfam PF03912
Panther DB PTHR34963 PTHR34963:SF2
NCBI CDD -
KEGG Orthology K08903; photosystem II 13kDa protein
Gene Ontology GO:0016020; membrane GO:0015979photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR AT4G28660 : photosystem II reaction center PSB28 protein
RAP-DB (Rice) LOC_Os01g71190.1 : photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a026092
Brachypodium KQK12266
Barley HORVU3Hr1G086190.8 , HORVU3Hr1G086190.1 , HORVU3Hr1G086190.3 , HORVU3Hr1G086190.4 , HORVU3Hr1G086190.7 , HORVU3Hr1G086190.6
Wheat TraesCS3B02G392800 , TraesCS5D02G516700 , TraesCS3A02G360500 , TraesCS3D02G354300 , TraesCS4A02G355600 , TraesCS5B02G516600 , TraesCS4A02G355600 , TraesCS5B02G516600 , TraesCS4A02G355600
Populus -


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cDNA sequences
Sobic.003G419900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G181400 TraB family protein, putative, expressed -
2 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
3 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
4 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
5 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
6 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
7 Sobic.004G028300 expressed protein -
8 Sobic.001G289500 kinase, pfkB family, putative, expressed -
9 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
10 Sobic.001G005200 expressed protein -
11 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
12 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
13 Sobic.010G035400 expressed protein -
14 Sobic.007G225500 expressed protein -
15 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
16 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
17 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
18 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
19 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
20 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic003G419900 Sobic003G419900 Sobic007G181400 Sobic007G181400 Sobic003G419900--Sobic007G181400 Sobic004G353100 Sobic004G353100 Sobic003G419900--Sobic004G353100 Sobic004G359600 Sobic004G359600 Sobic003G419900--Sobic004G359600 Sobic004G202200 Sobic004G202200 Sobic003G419900--Sobic004G202200 Sobic002G233700 Sobic002G233700 Sobic003G419900--Sobic002G233700 Sobic006G140500 Sobic006G140500 Sobic003G419900--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic003G419900--Sobic004G028300 Sobic001G289500 Sobic001G289500 Sobic003G419900--Sobic001G289500 Sobic001G015200 Sobic001G015200 Sobic003G419900--Sobic001G015200 Sobic007G181400--Sobic001G015200 Sobic007G181400--Sobic003G419900 Sobic007G181400--Sobic004G359600 Sobic007G181400--Sobic004G202200 Sobic002G275300 Sobic002G275300 Sobic007G181400--Sobic002G275300 Sobic007G181400--Sobic001G289500 Sobic001G491000 Sobic001G491000 Sobic007G181400--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic007G181400--Sobic006G238200 Sobic008G088821 Sobic008G088821 Sobic007G181400--Sobic008G088821 Sobic007G103400 Sobic007G103400 Sobic004G353100--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic004G353100--Sobic009G237000 Sobic002G133900 Sobic002G133900 Sobic004G353100--Sobic002G133900 Sobic002G298800 Sobic002G298800 Sobic004G353100--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic004G353100--Sobic010G035400 Sobic003G070900 Sobic003G070900 Sobic004G353100--Sobic003G070900 Sobic003G233700 Sobic003G233700 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic009G170200 Sobic009G170200 Sobic004G353100--Sobic009G170200 Sobic007G173800 Sobic007G173800 Sobic004G359600--Sobic007G173800 Sobic001G167900 Sobic001G167900 Sobic004G359600--Sobic001G167900 Sobic008G102000 Sobic008G102000 Sobic004G359600--Sobic008G102000 Sobic004G359600--Sobic007G181400 Sobic003G378600 Sobic003G378600 Sobic004G359600--Sobic003G378600 Sobic006G265900 Sobic006G265900 Sobic004G359600--Sobic006G265900 Sobic001G005200 Sobic001G005200 Sobic004G359600--Sobic001G005200 Sobic008G172700 Sobic008G172700 Sobic004G359600--Sobic008G172700 Sobic009G140600 Sobic009G140600 Sobic004G359600--Sobic009G140600 Sobic004G202200--Sobic001G289500 Sobic006G235350 Sobic006G235350 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic009G133700 Sobic009G133700 Sobic004G202200--Sobic009G133700 Sobic001G029600 Sobic001G029600 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic004G202200--Sobic007G181400 Sobic008G171300 Sobic008G171300 Sobic002G233700--Sobic008G171300 Sobic004G012900 Sobic004G012900 Sobic002G233700--Sobic004G012900 Sobic004G303200 Sobic004G303200 Sobic002G233700--Sobic004G303200 Sobic007G052400 Sobic007G052400 Sobic002G233700--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic002G233700--Sobic007G225500 Sobic002G233700--Sobic001G005200 Sobic003G002300 Sobic003G002300 Sobic002G233700--Sobic003G002300 Sobic002G401800 Sobic002G401800 Sobic002G233700--Sobic002G401800 Sobic002G233700--Sobic003G378600 Sobic006G140500--Sobic008G088821 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic006G140500--Sobic001G029600 Sobic009G119300 Sobic009G119300 Sobic006G140500--Sobic009G119300 Sobic006G140500--Sobic004G028300 Sobic006G140500--Sobic004G202200 Sobic005G028800 Sobic005G028800 Sobic006G140500--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic006G140500--Sobic007G166300 Sobic004G028300--Sobic008G088821 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic006G063900 Sobic006G063900 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic004G028300--Sobic003G419900 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G289500--Sobic007G108900 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000
Octagon: transcription factors


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