Gene annotation
Transcriptome id Sobic.001G029600.1
Synonym Sb01g002780
Functional annotation - (PubMedID : 26465154)
expressed protein
UniProt A0A1B6QH30
Pfam PF11493
Panther DB PTHR36370 PTHR36370:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47070 : -
RAP-DB (Rice) LOC_Os03g61090.1 : expressed protein
MaizeGDB (Corn) Zm00025a008867
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G029600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
2 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
3 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
5 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
6 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
7 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
8 Sobic.009G133700 expressed protein -
9 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
10 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
11 Sobic.003G304300 expressed protein -
12 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
13 Sobic.007G087100 pentatricopeptide, putative, expressed -
14 Sobic.003G409700 rieske domain containing protein, expressed -
15 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
16 Sobic.007G016600 expressed protein -
17 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
18 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
19 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
20 Sobic.006G235350 - -


Gene co-expression network
sample Sobic001G029600 Sobic001G029600 Sobic006G140500 Sobic006G140500 Sobic001G029600--Sobic006G140500 Sobic004G202200 Sobic004G202200 Sobic001G029600--Sobic004G202200 Sobic004G267700 Sobic004G267700 Sobic001G029600--Sobic004G267700 Sobic009G119300 Sobic009G119300 Sobic001G029600--Sobic009G119300 Sobic004G268400 Sobic004G268400 Sobic001G029600--Sobic004G268400 Sobic008G088821 Sobic008G088821 Sobic001G029600--Sobic008G088821 Sobic003G380200 Sobic003G380200 Sobic001G029600--Sobic003G380200 Sobic009G133700 Sobic009G133700 Sobic001G029600--Sobic009G133700 Sobic001G015200 Sobic001G015200 Sobic001G029600--Sobic001G015200 Sobic006G140500--Sobic008G088821 Sobic006G235350 Sobic006G235350 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic006G140500--Sobic001G029600 Sobic006G140500--Sobic009G119300 Sobic004G028300 Sobic004G028300 Sobic006G140500--Sobic004G028300 Sobic006G140500--Sobic004G202200 Sobic005G028800 Sobic005G028800 Sobic006G140500--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic006G140500--Sobic007G166300 Sobic001G289500 Sobic001G289500 Sobic004G202200--Sobic001G289500 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic004G202200--Sobic009G133700 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic007G181400 Sobic007G181400 Sobic004G202200--Sobic007G181400 Sobic004G267700--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic004G267700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic004G267700--Sobic010G101000 Sobic007G016600 Sobic007G016600 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic002G351200 Sobic002G351200 Sobic004G267700--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic004G267700--Sobic001G018000 Sobic003G186800 Sobic003G186800 Sobic004G267700--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic004G267700--Sobic010G100900 Sobic009G119300--Sobic008G088821 Sobic009G119300--Sobic001G015200 Sobic009G119300--Sobic010G101000 Sobic009G119300--Sobic006G140500 Sobic009G119300--Sobic003G186800 Sobic009G119300--Sobic004G268400 Sobic009G119300--Sobic001G018000 Sobic003G103300 Sobic003G103300 Sobic009G119300--Sobic003G103300 Sobic009G119300--Sobic004G267700 Sobic004G268400--Sobic004G267700 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic008G088821--Sobic001G018000 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic003G380200--Sobic004G268400 Sobic007G157300 Sobic007G157300 Sobic009G133700--Sobic007G157300 Sobic003G409700 Sobic003G409700 Sobic009G133700--Sobic003G409700 Sobic009G133700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic009G133700--Sobic003G341300 Sobic002G047400 Sobic002G047400 Sobic009G133700--Sobic002G047400 Sobic007G135800 Sobic007G135800 Sobic009G133700--Sobic007G135800 Sobic009G133700--Sobic003G005000 Sobic003G228300 Sobic003G228300 Sobic009G133700--Sobic003G228300 Sobic009G133700--Sobic004G202200 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000
Octagon: transcription factors


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