Gene annotation
Transcriptome id Sobic.007G087100.1
Synonym Sb07g007540
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YJF6
Pfam PF13812 PF01535 PF13041
Panther DB PTHR12683 PTHR12683:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007049; cell cycle GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G30825 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g25550.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a054982
Brachypodium PNT64614
Barley HORVU5Hr1G064130.1 , HORVU5Hr1G064130.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
2 Sobic.009G073900 thioredoxin, putative, expressed -
3 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
4 Sobic.001G077300 thioredoxin, putative, expressed -
5 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
7 Sobic.009G103000 ubiquitin family protein, putative, expressed -
8 Sobic.003G003450 - K01177: beta-amylase
9 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
10 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
11 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
13 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
14 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G409700 rieske domain containing protein, expressed -
16 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
17 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
18 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
19 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.006G212800 expressed protein -


Gene co-expression network
sample Sobic007G087100 Sobic007G087100 Sobic003G380200 Sobic003G380200 Sobic007G087100--Sobic003G380200 Sobic009G073900 Sobic009G073900 Sobic007G087100--Sobic009G073900 Sobic009G170200 Sobic009G170200 Sobic007G087100--Sobic009G170200 Sobic001G077300 Sobic001G077300 Sobic007G087100--Sobic001G077300 Sobic002G356900 Sobic002G356900 Sobic007G087100--Sobic002G356900 Sobic006G232600 Sobic006G232600 Sobic007G087100--Sobic006G232600 Sobic009G103000 Sobic009G103000 Sobic007G087100--Sobic009G103000 Sobic003G003450 Sobic003G003450 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic003G380200--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic006G090100 Sobic006G090100 Sobic009G073900--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic009G073900--Sobic001G509200 Sobic009G073900--Sobic007G087100 Sobic003G094100 Sobic003G094100 Sobic009G073900--Sobic003G094100 Sobic002G081400 Sobic002G081400 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic006G213700 Sobic006G213700 Sobic009G073900--Sobic006G213700 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic001G077300--Sobic003G003450 Sobic002G356900--Sobic010G100900 Sobic002G356900--Sobic007G087100 Sobic004G300100 Sobic004G300100 Sobic002G356900--Sobic004G300100 Sobic002G356900--Sobic003G380200 Sobic002G356900--Sobic009G170200 Sobic007G010800 Sobic007G010800 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic010G231500 Sobic010G231500 Sobic002G356900--Sobic010G231500 Sobic004G317700 Sobic004G317700 Sobic002G356900--Sobic004G317700 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic006G232600--Sobic002G081400 Sobic009G103000--Sobic007G087100 Sobic009G103000--Sobic001G077300 Sobic009G103000--Sobic009G170200 Sobic009G103000--Sobic009G073900 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic009G103000--Sobic006G213700 Sobic009G103000--Sobic001G378100 Sobic009G103000--Sobic006G212800 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic003G003450--Sobic006G232600 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic001G393300 Sobic001G393300 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic007G135800--Sobic003G341300
Octagon: transcription factors


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