Gene annotation
Transcriptome id Sobic.009G103000.2
Synonym Sb09g016480
Functional annotation ubiquitin family protein, putative, expressed
UniProt A0A1Z5R1X8
Pfam -
Panther DB PTHR24015 PTHR24015:SF683
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30100 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os05g28500.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043479
Brachypodium KQK06799
Barley HORVU1Hr1G060200.1 , HORVU1Hr1G060170.1 , HORVU1Hr1G060170.2
Wheat TraesCS1A02G222900 , TraesCS1B02G236200 , TraesCS1D02G224500
Populus -


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cDNA sequences
Sobic.009G103000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G087100 pentatricopeptide, putative, expressed -
2 Sobic.001G077300 thioredoxin, putative, expressed -
3 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
4 Sobic.009G073900 thioredoxin, putative, expressed -
5 Sobic.003G003450 - K01177: beta-amylase
6 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
7 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
8 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
9 Sobic.006G212800 expressed protein -
10 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
11 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
12 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.001G536700 expressed protein -
16 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.007G090900 heat shock protein-related, putative, expressed -
18 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
19 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
20 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -


Gene co-expression network
sample Sobic009G103000 Sobic009G103000 Sobic007G087100 Sobic007G087100 Sobic009G103000--Sobic007G087100 Sobic001G077300 Sobic001G077300 Sobic009G103000--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic009G103000--Sobic009G170200 Sobic009G073900 Sobic009G073900 Sobic009G103000--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic009G103000--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic009G103000--Sobic006G232600 Sobic006G213700 Sobic006G213700 Sobic009G103000--Sobic006G213700 Sobic001G378100 Sobic001G378100 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic007G087100--Sobic003G380200 Sobic007G087100--Sobic009G073900 Sobic007G087100--Sobic009G170200 Sobic007G087100--Sobic001G077300 Sobic002G356900 Sobic002G356900 Sobic007G087100--Sobic002G356900 Sobic007G087100--Sobic006G232600 Sobic007G087100--Sobic009G103000 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic001G077300--Sobic009G073900 Sobic006G090100 Sobic006G090100 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic001G077300--Sobic006G212800 Sobic001G077300--Sobic003G003450 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic009G073900--Sobic001G509200 Sobic009G073900--Sobic007G087100 Sobic003G094100 Sobic003G094100 Sobic009G073900--Sobic003G094100 Sobic002G081400 Sobic002G081400 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic009G073900--Sobic006G213700 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic003G003450--Sobic006G232600 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic006G232600--Sobic002G081400 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic006G213700--Sobic003G380200 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic006G213700--Sobic003G094100 Sobic003G409700 Sobic003G409700 Sobic006G213700--Sobic003G409700 Sobic006G213700--Sobic006G090100 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic001G378100--Sobic006G232600 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic009G207900 Sobic009G207900 Sobic006G212800--Sobic009G207900 Sobic006G212800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic002G206300 Sobic002G206300 Sobic006G212800--Sobic002G206300 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic002G162400 Sobic002G162400 Sobic006G212800--Sobic002G162400
Octagon: transcription factors


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