Gene annotation
Transcriptome id Sobic.009G093100.1
Synonym Sb09g011240
Functional annotation OsAGSW1(Ortholog in rice:Li and Li 2015) (PubMedID : 31659923)
ELMO/CED-12 family protein, putative, expressed
UniProt A0A097PQN7 , C5YVQ8
Pfam PF03109
Panther DB PTHR10566 PTHR10566:SF85
NCBI CDD KOG1235; Predicted unusual protein kinase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79600 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os05g25840.3 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a037091 , Zm00025a043290
Brachypodium KQK06851 , KQK06852 , KQK06853 , KQK06854
Barley HORVU1Hr1G034470.1 , HORVU1Hr1G034470.3 , HORVU1Hr1G034470.2 , HORVU1Hr1G034470.4
Wheat TraesCS1B02G151900 , TraesCS1B02G151900 , TraesCS1A02G136500 , TraesCS1A02G136500
Populus -


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cDNA sequences
Sobic.009G093100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G077300 thioredoxin, putative, expressed -
2 Sobic.001G359300 cytochrome P450, putative, expressed -
3 Sobic.004G019800 MATE domain containing protein, expressed -
4 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
5 Sobic.001G536700 expressed protein -
6 Sobic.009G073900 thioredoxin, putative, expressed -
7 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
8 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
9 Sobic.001G333800 MYB family transcription factor, putative, expressed -
10 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
11 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
12 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
13 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
15 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
16 Sobic.003G203300 stress regulated protein, putative, expressed -
17 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
18 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
19 Sobic.006G212800 expressed protein -
20 Sobic.001G504400 expressed protein -


Gene co-expression network
sample Sobic009G093100 Sobic009G093100 Sobic001G077300 Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic009G093100--Sobic001G359300 Sobic004G019800 Sobic004G019800 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800 Sobic001G077300--Sobic009G073900 Sobic006G090100 Sobic006G090100 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G077300--Sobic001G359300 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic001G359300--Sobic001G077300 Sobic001G258200 Sobic001G258200 Sobic001G359300--Sobic001G258200 Sobic001G359300--Sobic009G093100 Sobic001G359300--Sobic001G333800 Sobic002G382700 Sobic002G382700 Sobic001G359300--Sobic002G382700 Sobic001G359300--Sobic009G073900 Sobic003G073800 Sobic003G073800 Sobic001G359300--Sobic003G073800 Sobic001G359300--Sobic006G090100 Sobic005G068700 Sobic005G068700 Sobic001G359300--Sobic005G068700 Sobic004G019800--Sobic009G093100 Sobic004G019800--Sobic001G378100 Sobic004G019800--Sobic001G536700 Sobic009G170200 Sobic009G170200 Sobic004G019800--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G019800--Sobic001G504400 Sobic009G237000 Sobic009G237000 Sobic004G019800--Sobic009G237000 Sobic004G019800--Sobic001G359300 Sobic002G258600 Sobic002G258600 Sobic004G019800--Sobic002G258600 Sobic003G233700 Sobic003G233700 Sobic004G019800--Sobic003G233700 Sobic006G065100--Sobic009G093100 Sobic006G065100--Sobic001G077300 Sobic006G065100--Sobic004G127800 Sobic006G065100--Sobic003G073800 Sobic006G065100--Sobic001G378100 Sobic006G065100--Sobic006G090100 Sobic002G081400 Sobic002G081400 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic006G065100--Sobic001G333800 Sobic001G536700--Sobic002G206300 Sobic001G536700--Sobic001G378100 Sobic001G180200 Sobic001G180200 Sobic001G536700--Sobic001G180200 Sobic003G094100 Sobic003G094100 Sobic001G536700--Sobic003G094100 Sobic001G536700--Sobic003G341300 Sobic001G345100 Sobic001G345100 Sobic001G536700--Sobic001G345100 Sobic001G536700--Sobic001G077300 Sobic001G536700--Sobic001G504400 Sobic007G135800 Sobic007G135800 Sobic001G536700--Sobic007G135800 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic009G073900--Sobic001G509200 Sobic007G087100 Sobic007G087100 Sobic009G073900--Sobic007G087100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic006G213700 Sobic006G213700 Sobic009G073900--Sobic006G213700 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200 Sobic009G038701 Sobic009G038701 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic002G206300--Sobic001G536700 Sobic009G207900 Sobic009G207900 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic008G129900 Sobic008G129900 Sobic002G206300--Sobic008G129900 Sobic002G206300--Sobic001G217900 Sobic002G206300--Sobic003G341300 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300
Octagon: transcription factors


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