Gene annotation
Transcriptome id Sobic.004G019800.3,Sobic.004G019800.2,Sobic.004G019800.4
Synonym Sb04g001840
Functional annotation MATE domain containing protein, expressed
UniProt A0A1Z5RLB2 , A0A1Z5RKQ2
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF116
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G21340 : MATE efflux family protein
RAP-DB (Rice) LOC_Os02g02980.1 : MATE domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018773
Brachypodium KQJ93010
Barley HORVU6Hr1G012070.14 , HORVU6Hr1G012070.15 , HORVU6Hr1G012070.10 , HORVU6Hr1G012070.11 , HORVU6Hr1G012070.12 , HORVU6Hr1G012070.13 , HORVU6Hr1G012070.8 , HORVU6Hr1G012070.9 , HORVU6Hr1G012070.6 , HORVU6Hr1G012070.4 , HORVU6Hr1G012070.5 , HORVU6Hr1G012070.2 , HORVU6Hr1G012070.3 , HORVU6Hr1G012070.1
Wheat TraesCS6B02G090100 , TraesCS6B02G090100 , TraesCSU02G117300 , TraesCS6A02G066900 , TraesCS6A02G066900 , TraesCS6A02G066900
Populus -


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cDNA sequences
Sobic.004G019800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
2 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
3 Sobic.001G536700 expressed protein -
4 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
5 Sobic.001G504400 expressed protein -
6 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
7 Sobic.001G359300 cytochrome P450, putative, expressed -
8 Sobic.002G258600 expressed protein -
9 Sobic.003G233700 SET domain-containing protein, putative, expressed -
10 Sobic.001G540600 expressed protein -
11 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
12 Sobic.001G077300 thioredoxin, putative, expressed -
13 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
14 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
16 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
17 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
18 Sobic.007G103400 expressed protein -
19 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
20 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31


Gene co-expression network
sample Sobic004G019800 Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic004G019800--Sobic009G093100 Sobic001G378100 Sobic001G378100 Sobic004G019800--Sobic001G378100 Sobic001G536700 Sobic001G536700 Sobic004G019800--Sobic001G536700 Sobic009G170200 Sobic009G170200 Sobic004G019800--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G019800--Sobic001G504400 Sobic009G237000 Sobic009G237000 Sobic004G019800--Sobic009G237000 Sobic001G359300 Sobic001G359300 Sobic004G019800--Sobic001G359300 Sobic002G258600 Sobic002G258600 Sobic004G019800--Sobic002G258600 Sobic003G233700 Sobic003G233700 Sobic004G019800--Sobic003G233700 Sobic001G077300 Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic009G093100--Sobic001G359300 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic001G536700--Sobic002G206300 Sobic001G536700--Sobic001G378100 Sobic001G180200 Sobic001G180200 Sobic001G536700--Sobic001G180200 Sobic003G094100 Sobic003G094100 Sobic001G536700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic001G536700--Sobic003G341300 Sobic001G345100 Sobic001G345100 Sobic001G536700--Sobic001G345100 Sobic001G536700--Sobic001G077300 Sobic001G536700--Sobic001G504400 Sobic007G135800 Sobic007G135800 Sobic001G536700--Sobic007G135800 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic009G237000--Sobic007G103400 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic002G298800 Sobic002G298800 Sobic009G237000--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic009G237000--Sobic010G035400 Sobic009G237000--Sobic001G504400 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic008G074000 Sobic008G074000 Sobic009G237000--Sobic008G074000 Sobic001G359300--Sobic001G077300 Sobic001G359300--Sobic001G258200 Sobic001G359300--Sobic009G093100 Sobic001G359300--Sobic001G333800 Sobic002G382700 Sobic002G382700 Sobic001G359300--Sobic002G382700 Sobic001G359300--Sobic009G073900 Sobic001G359300--Sobic003G073800 Sobic006G090100 Sobic006G090100 Sobic001G359300--Sobic006G090100 Sobic005G068700 Sobic005G068700 Sobic001G359300--Sobic005G068700 Sobic002G258600--Sobic008G074000 Sobic001G183000 Sobic001G183000 Sobic002G258600--Sobic001G183000 Sobic002G258600--Sobic004G019800 Sobic009G024300 Sobic009G024300 Sobic002G258600--Sobic009G024300 Sobic002G258600--Sobic009G237000 Sobic002G118200 Sobic002G118200 Sobic002G258600--Sobic002G118200 Sobic001G516901 Sobic001G516901 Sobic002G258600--Sobic001G516901 Sobic007G162600 Sobic007G162600 Sobic002G258600--Sobic007G162600 Sobic003G287900 Sobic003G287900 Sobic002G258600--Sobic003G287900 Sobic003G233700--Sobic007G103400 Sobic003G233700--Sobic003G287900 Sobic003G233700--Sobic004G353100 Sobic003G233700--Sobic002G133900 Sobic003G233700--Sobic009G237000 Sobic003G160800 Sobic003G160800 Sobic003G233700--Sobic003G160800 Sobic003G233700--Sobic008G074000 Sobic003G094350 Sobic003G094350 Sobic003G233700--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic003G233700--Sobic001G500600
Octagon: transcription factors


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