Gene annotation
Transcriptome id Sobic.002G258600.1
Synonym Sb02g029370
Functional annotation expressed protein
UniProt C5X591
Pfam -
Panther DB PTHR36777 PTHR36777:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13220 : -
RAP-DB (Rice) LOC_Os12g17830.3 : expressed protein
MaizeGDB (Corn) Zm00025a047588
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
2 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
3 Sobic.004G019800 MATE domain containing protein, expressed -
4 Sobic.009G024300 inner membrane protein alx, putative, expressed -
5 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
6 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
7 Sobic.001G516901 - -
8 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
9 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
10 Sobic.003G233700 SET domain-containing protein, putative, expressed -
11 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
12 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
13 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
14 Sobic.003G085100 MYB family transcription factor, putative, expressed -
15 Sobic.001G504400 expressed protein -
16 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
17 Sobic.007G103400 expressed protein -
18 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
19 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
20 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ


Gene co-expression network
sample Sobic002G258600 Sobic002G258600 Sobic008G074000 Sobic008G074000 Sobic002G258600--Sobic008G074000 Sobic001G183000 Sobic001G183000 Sobic002G258600--Sobic001G183000 Sobic004G019800 Sobic004G019800 Sobic002G258600--Sobic004G019800 Sobic009G024300 Sobic009G024300 Sobic002G258600--Sobic009G024300 Sobic009G237000 Sobic009G237000 Sobic002G258600--Sobic009G237000 Sobic002G118200 Sobic002G118200 Sobic002G258600--Sobic002G118200 Sobic001G516901 Sobic001G516901 Sobic002G258600--Sobic001G516901 Sobic007G162600 Sobic007G162600 Sobic002G258600--Sobic007G162600 Sobic003G287900 Sobic003G287900 Sobic002G258600--Sobic003G287900 Sobic003G070900 Sobic003G070900 Sobic008G074000--Sobic003G070900 Sobic007G103400 Sobic007G103400 Sobic008G074000--Sobic007G103400 Sobic002G133900 Sobic002G133900 Sobic008G074000--Sobic002G133900 Sobic003G233700 Sobic003G233700 Sobic008G074000--Sobic003G233700 Sobic008G074000--Sobic009G237000 Sobic001G504400 Sobic001G504400 Sobic008G074000--Sobic001G504400 Sobic004G353100 Sobic004G353100 Sobic008G074000--Sobic004G353100 Sobic009G170200 Sobic009G170200 Sobic008G074000--Sobic009G170200 Sobic009G219100 Sobic009G219100 Sobic008G074000--Sobic009G219100 Sobic006G101500 Sobic006G101500 Sobic001G183000--Sobic006G101500 Sobic001G183000--Sobic002G258600 Sobic001G183000--Sobic009G237000 Sobic001G134700 Sobic001G134700 Sobic001G183000--Sobic001G134700 Sobic004G211600 Sobic004G211600 Sobic001G183000--Sobic004G211600 Sobic008G006100 Sobic008G006100 Sobic001G183000--Sobic008G006100 Sobic003G160800 Sobic003G160800 Sobic001G183000--Sobic003G160800 Sobic001G521200 Sobic001G521200 Sobic001G183000--Sobic001G521200 Sobic005G001700 Sobic005G001700 Sobic001G183000--Sobic005G001700 Sobic009G093100 Sobic009G093100 Sobic004G019800--Sobic009G093100 Sobic001G378100 Sobic001G378100 Sobic004G019800--Sobic001G378100 Sobic001G536700 Sobic001G536700 Sobic004G019800--Sobic001G536700 Sobic004G019800--Sobic009G170200 Sobic004G019800--Sobic001G504400 Sobic004G019800--Sobic009G237000 Sobic001G359300 Sobic001G359300 Sobic004G019800--Sobic001G359300 Sobic004G019800--Sobic002G258600 Sobic004G019800--Sobic003G233700 Sobic009G024300--Sobic001G516901 Sobic009G024300--Sobic002G258600 Sobic004G328400 Sobic004G328400 Sobic009G024300--Sobic004G328400 Sobic003G151500 Sobic003G151500 Sobic009G024300--Sobic003G151500 Sobic001G500600 Sobic001G500600 Sobic009G024300--Sobic001G500600 Sobic009G024300--Sobic007G162600 Sobic009G024300--Sobic003G287900 Sobic003G085100 Sobic003G085100 Sobic009G024300--Sobic003G085100 Sobic005G063000 Sobic005G063000 Sobic009G024300--Sobic005G063000 Sobic009G237000--Sobic007G103400 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic002G298800 Sobic002G298800 Sobic009G237000--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic009G237000--Sobic010G035400 Sobic009G237000--Sobic001G504400 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic009G237000--Sobic008G074000 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic002G118200--Sobic003G085100 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic002G118200--Sobic004G019800 Sobic002G118200--Sobic009G093100 Sobic002G118200--Sobic008G074000 Sobic001G516901--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic001G516901--Sobic006G197300 Sobic004G336200 Sobic004G336200 Sobic001G516901--Sobic004G336200 Sobic002G043600 Sobic002G043600 Sobic001G516901--Sobic002G043600 Sobic001G516901--Sobic009G024300 Sobic001G516901--Sobic010G035400 Sobic004G238200 Sobic004G238200 Sobic001G516901--Sobic004G238200 Sobic001G516901--Sobic002G258600 Sobic001G516901--Sobic003G160800 Sobic007G162600--Sobic001G500600 Sobic007G162600--Sobic003G070900 Sobic007G162600--Sobic002G258600 Sobic003G094350 Sobic003G094350 Sobic007G162600--Sobic003G094350 Sobic007G162600--Sobic008G006100 Sobic007G162600--Sobic009G237000 Sobic007G162600--Sobic009G170200 Sobic007G162600--Sobic001G516901 Sobic007G162600--Sobic003G287900 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic003G287900--Sobic009G170200
Octagon: transcription factors


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