Gene annotation
Transcriptome id Sobic.008G074000.1
Synonym scpl20
Functional annotation OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1B6PC54
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF62
NCBI CDD KOG1282; Serine carboxypeptidases (lysosomal cathepsin A)
KEGG Orthology K16296; serine carboxypeptidase-like clade I
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT4G12910 : serine carboxypeptidase-like 20
RAP-DB (Rice) LOC_Os12g15470.2 : OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a025628 , Zm00025a054458
Brachypodium KQJ91721 , KQJ91720
Barley HORVU3Hr1G096830.15 , HORVU3Hr1G096830.13 , HORVU3Hr1G096830.12 , HORVU3Hr1G096830.11 , HORVU3Hr1G096830.10 , HORVU3Hr1G096830.9 , HORVU3Hr1G096830.8 , HORVU3Hr1G096830.5 , HORVU3Hr1G096830.4 , HORVU3Hr1G096830.3 , HORVU3Hr1G096830.2 , HORVU3Hr1G096830.1
Wheat TraesCS3B02G481300 , TraesCS3D02G438800 , TraesCS3A02G446200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G074000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
2 Sobic.007G103400 expressed protein -
3 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.003G233700 SET domain-containing protein, putative, expressed -
5 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
6 Sobic.001G504400 expressed protein -
7 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
8 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
9 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
10 Sobic.002G258600 expressed protein -
11 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
12 Sobic.008G006100 MATE efflux protein, putative, expressed -
13 Sobic.003G203300 stress regulated protein, putative, expressed -
14 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
15 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
16 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
17 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
19 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
20 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase


Gene co-expression network
sample Sobic008G074000 Sobic008G074000 Sobic003G070900 Sobic003G070900 Sobic008G074000--Sobic003G070900 Sobic007G103400 Sobic007G103400 Sobic008G074000--Sobic007G103400 Sobic002G133900 Sobic002G133900 Sobic008G074000--Sobic002G133900 Sobic003G233700 Sobic003G233700 Sobic008G074000--Sobic003G233700 Sobic009G237000 Sobic009G237000 Sobic008G074000--Sobic009G237000 Sobic001G504400 Sobic001G504400 Sobic008G074000--Sobic001G504400 Sobic004G353100 Sobic004G353100 Sobic008G074000--Sobic004G353100 Sobic009G170200 Sobic009G170200 Sobic008G074000--Sobic009G170200 Sobic009G219100 Sobic009G219100 Sobic008G074000--Sobic009G219100 Sobic003G070900--Sobic002G133900 Sobic003G287900 Sobic003G287900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G094350 Sobic003G094350 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic001G500600 Sobic001G500600 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic002G275300 Sobic002G275300 Sobic007G103400--Sobic002G275300 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic005G100300 Sobic005G100300 Sobic002G133900--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic002G133900--Sobic002G028400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200 Sobic003G233700--Sobic007G103400 Sobic003G233700--Sobic003G287900 Sobic003G233700--Sobic004G353100 Sobic003G233700--Sobic002G133900 Sobic003G233700--Sobic009G237000 Sobic003G160800 Sobic003G160800 Sobic003G233700--Sobic003G160800 Sobic003G233700--Sobic008G074000 Sobic003G233700--Sobic003G094350 Sobic003G233700--Sobic001G500600 Sobic009G237000--Sobic007G103400 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic009G237000--Sobic002G298800 Sobic009G237000--Sobic010G035400 Sobic009G237000--Sobic001G504400 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic009G237000--Sobic008G074000 Sobic002G206300 Sobic002G206300 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100 Sobic004G353100--Sobic007G103400 Sobic004G353100--Sobic009G237000 Sobic004G353100--Sobic002G133900 Sobic004G353100--Sobic002G298800 Sobic004G353100--Sobic010G035400 Sobic004G353100--Sobic003G070900 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic009G170200--Sobic007G103400 Sobic004G154400 Sobic004G154400 Sobic009G219100--Sobic004G154400 Sobic009G207900 Sobic009G207900 Sobic009G219100--Sobic009G207900 Sobic009G062400 Sobic009G062400 Sobic009G219100--Sobic009G062400 Sobic009G219100--Sobic009G237000 Sobic009G219100--Sobic008G074000 Sobic009G219100--Sobic001G504400 Sobic009G093100 Sobic009G093100 Sobic009G219100--Sobic009G093100 Sobic009G219100--Sobic002G206300 Sobic005G179300 Sobic005G179300 Sobic009G219100--Sobic005G179300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.