Gene annotation
Transcriptome id Sobic.001G378100.2
Synonym ATRSH1, AT-RSH1, Sb01g035870, RSH1
Functional annotation relA-SpoT like protein RSH1, putative, expressed
UniProt A0A1Z5SA74
Pfam PF13328 PF02824 PF04607
Panther DB PTHR21262 PTHR21262:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015969; guanosine tetraphosphate metabolic process


Orthologs (automatic annotation)
TAIR AT4G02260 : RELA/SPOT homolog 1
RAP-DB (Rice) LOC_Os03g22160.1 : relA-SpoT like protein RSH1, putative, expressed
MaizeGDB (Corn) Zm00025a002383 , Zm00025a052411 , Zm00025a033338
Brachypodium PNT77446 , KQK21765 , KQK21764
Barley HORVU4Hr1G047070.18 , HORVU4Hr1G047070.19 , HORVU4Hr1G047070.14 , HORVU4Hr1G047070.15 , HORVU4Hr1G047070.16 , HORVU4Hr1G047070.17 , HORVU4Hr1G047070.10 , HORVU4Hr1G047070.11 , HORVU4Hr1G047070.12 , HORVU4Hr1G047070.13 , HORVU4Hr1G047070.6 , HORVU4Hr1G047070.7 , HORVU4Hr1G047070.4 , HORVU4Hr1G047070.5 , HORVU4Hr1G047070.2 , HORVU4Hr1G047070.3 , HORVU4Hr1G047070.1 , HORVU4Hr1G047070.8 , HORVU4Hr1G047070.9
Wheat TraesCS4D02G169500 , TraesCS4D02G169500 , TraesCS4D02G169500 , TraesCS4D02G169500 , TraesCS4D02G169500 , TraesCS4A02G140200 , TraesCS4A02G140200 , TraesCS4A02G140200 , TraesCS4B02G167000
Populus PNT04488


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cDNA sequences
Sobic.001G378100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
2 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G504400 expressed protein -
4 Sobic.001G077300 thioredoxin, putative, expressed -
5 Sobic.001G540600 expressed protein -
6 Sobic.001G536700 expressed protein -
7 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
8 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
9 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.004G019800 MATE domain containing protein, expressed -
13 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
14 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
15 Sobic.007G103400 expressed protein -
16 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
17 Sobic.009G073900 thioredoxin, putative, expressed -
18 Sobic.010G002700 expressed protein -
19 Sobic.003G003450 - K01177: beta-amylase
20 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC


Gene co-expression network
sample Sobic001G378100 Sobic001G378100 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G077300 Sobic001G077300 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic003G073800--Sobic001G378100 Sobic003G073800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic003G073800--Sobic001G180200 Sobic009G207900 Sobic009G207900 Sobic003G073800--Sobic009G207900 Sobic003G073800--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic003G073800--Sobic009G073900 Sobic006G090100 Sobic006G090100 Sobic003G073800--Sobic006G090100 Sobic007G058100 Sobic007G058100 Sobic003G073800--Sobic007G058100 Sobic002G206300 Sobic002G206300 Sobic003G073800--Sobic002G206300 Sobic001G217900--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G217900--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G217900--Sobic008G129900 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic008G033000 Sobic008G033000 Sobic001G217900--Sobic008G033000 Sobic001G217900--Sobic001G540600 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic001G540600--Sobic001G378100 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic001G540600--Sobic009G207900 Sobic001G540600--Sobic003G073800 Sobic001G536700--Sobic002G206300 Sobic001G536700--Sobic001G378100 Sobic001G536700--Sobic001G180200 Sobic003G094100 Sobic003G094100 Sobic001G536700--Sobic003G094100 Sobic001G536700--Sobic003G341300 Sobic001G345100 Sobic001G345100 Sobic001G536700--Sobic001G345100 Sobic001G536700--Sobic001G077300 Sobic001G536700--Sobic001G504400 Sobic007G135800 Sobic007G135800 Sobic001G536700--Sobic007G135800 Sobic006G232600--Sobic009G170200 Sobic007G087100 Sobic007G087100 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic009G170200--Sobic007G103400 Sobic001G258200--Sobic003G185900 Sobic002G382700 Sobic002G382700 Sobic001G258200--Sobic002G382700 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700
Octagon: transcription factors


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