Gene annotation
Transcriptome id Sobic.006G232600.2,Sobic.006G232600.1
Synonym PDS, PDS3, PDE226, Sb06g030030
Functional annotation amine oxidase, flavin-containing, domain containing protein, expressed
UniProt A0A1B6PNI1
Pfam PF13450
Panther DB PTHR10742 PTHR10742:SF278
NCBI CDD KOG0029; Amine oxidase
KEGG Orthology K02293; PDS, 15-cis-phytoene desaturase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14210 : phytoene desaturase 3
RAP-DB (Rice) LOC_Os03g08570.1 : amine oxidase, flavin-containing, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007279 , Zm00025a036772 , Zm00025a042670 , Zm00025a000962 , Zm00025a048411
Brachypodium KQK23275 , KQK23277 , KQK23276
Barley HORVU4Hr1G077450.14 , HORVU4Hr1G077450.13 , HORVU4Hr1G077450.12 , HORVU4Hr1G077450.11 , HORVU4Hr1G077450.10 , HORVU4Hr1G077450.9 , HORVU4Hr1G077450.8 , HORVU4Hr1G077450.7 , HORVU4Hr1G077450.6 , HORVU4Hr1G077450.5 , HORVU4Hr1G077450.4 , HORVU4Hr1G077450.3 , HORVU4Hr1G077450.2 , HORVU4Hr1G077450.1
Wheat TraesCS4A02G004900 , TraesCS4D02G299000 , TraesCS4D02G299000 , TraesCS4B02G300100 , TraesCS4B02G300100
Populus -


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cDNA sequences
Sobic.006G232600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
2 Sobic.007G087100 pentatricopeptide, putative, expressed -
3 Sobic.003G003450 - K01177: beta-amylase
4 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
5 Sobic.009G073900 thioredoxin, putative, expressed -
6 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
7 Sobic.009G103000 ubiquitin family protein, putative, expressed -
8 Sobic.001G077300 thioredoxin, putative, expressed -
9 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.003G203300 stress regulated protein, putative, expressed -
11 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
12 Sobic.001G536700 expressed protein -
13 Sobic.007G103400 expressed protein -
14 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
17 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
18 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
20 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


Gene co-expression network
sample Sobic006G232600 Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic006G232600--Sobic009G170200 Sobic007G087100 Sobic007G087100 Sobic006G232600--Sobic007G087100 Sobic003G003450 Sobic003G003450 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic009G073900 Sobic009G073900 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic001G077300 Sobic001G077300 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic003G380200 Sobic003G380200 Sobic007G087100--Sobic003G380200 Sobic007G087100--Sobic009G073900 Sobic007G087100--Sobic009G170200 Sobic007G087100--Sobic001G077300 Sobic002G356900 Sobic002G356900 Sobic007G087100--Sobic002G356900 Sobic007G087100--Sobic006G232600 Sobic007G087100--Sobic009G103000 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic001G378100--Sobic006G232600 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic009G073900--Sobic001G509200 Sobic009G073900--Sobic007G087100 Sobic003G094100 Sobic003G094100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic009G073900--Sobic006G213700 Sobic006G233700--Sobic006G232600 Sobic001G500600 Sobic001G500600 Sobic006G233700--Sobic001G500600 Sobic010G110400 Sobic010G110400 Sobic006G233700--Sobic010G110400 Sobic006G233700--Sobic009G170200 Sobic001G060500 Sobic001G060500 Sobic006G233700--Sobic001G060500 Sobic003G203300 Sobic003G203300 Sobic006G233700--Sobic003G203300 Sobic010G171600 Sobic010G171600 Sobic006G233700--Sobic010G171600 Sobic006G233700--Sobic003G070900 Sobic001G219700 Sobic001G219700 Sobic006G233700--Sobic001G219700 Sobic009G103000--Sobic007G087100 Sobic009G103000--Sobic001G077300 Sobic009G103000--Sobic009G170200 Sobic009G103000--Sobic009G073900 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic009G103000--Sobic006G213700 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic001G077300--Sobic006G212800 Sobic001G077300--Sobic003G003450 Sobic004G317700 Sobic004G317700 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic002G081400--Sobic001G077300 Sobic002G081400--Sobic003G003450 Sobic002G081400--Sobic006G090100 Sobic002G081400--Sobic001G509200 Sobic007G124500 Sobic007G124500 Sobic002G081400--Sobic007G124500 Sobic002G081400--Sobic009G170200
Octagon: transcription factors


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