Gene annotation
Transcriptome id Sobic.006G233700.1
Synonym Sb06g030120, POLGAMMA2
Functional annotation PolI-like DNA polymerase, putative, expressed
UniProt C5YGS0
Pfam PF01612 PF00476
Panther DB PTHR10133 PTHR10133:SF34
NCBI CDD -
KEGG Orthology K02335; DNA polymerase I
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding GO:0006260DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G50840 : polymerase gamma 2
RAP-DB (Rice) LOC_Os08g07840.1 : PolI-like DNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a057152 , Zm00025a055000
Brachypodium PNT66682 , PNT66683 , PNT66684 , PNT66685 , PNT66686 , KQJ95183 , KQJ95185 , KQJ95184 , KQJ95187 , KQJ95186 , PNT61954 , KQJ84864 , KQJ84865
Barley HORVU2Hr1G116060.2 , HORVU2Hr1G116060.3 , HORVU2Hr1G116060.6 , HORVU2Hr1G116060.5 , HORVU2Hr1G116060.8 , HORVU2Hr1G116060.9 , HORVU2Hr1G116060.10 , HORVU2Hr1G116060.1 , HORVU2Hr1G116060.7
Wheat TraesCS2A02G526000 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2B02G556100 , TraesCS2D02G528800 , TraesCS7A02G295900 , TraesCS7B02G184500 , TraesCS7A02G295900
Populus PNT59644


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
2 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
3 Sobic.010G110400 - -
4 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
5 Sobic.001G060500 YT521-B, putative, expressed -
6 Sobic.003G203300 stress regulated protein, putative, expressed -
7 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
8 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
9 Sobic.001G219700 pentatricopeptide, putative, expressed -
10 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
13 Sobic.006G197300 expressed protein -
14 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
15 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
16 Sobic.007G087100 pentatricopeptide, putative, expressed -
17 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
18 Sobic.004G019800 MATE domain containing protein, expressed -
19 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
20 Sobic.009G103000 ubiquitin family protein, putative, expressed -


Gene co-expression network
sample Sobic006G233700 Sobic006G233700 Sobic006G232600 Sobic006G232600 Sobic006G233700--Sobic006G232600 Sobic001G500600 Sobic001G500600 Sobic006G233700--Sobic001G500600 Sobic010G110400 Sobic010G110400 Sobic006G233700--Sobic010G110400 Sobic009G170200 Sobic009G170200 Sobic006G233700--Sobic009G170200 Sobic001G060500 Sobic001G060500 Sobic006G233700--Sobic001G060500 Sobic003G203300 Sobic003G203300 Sobic006G233700--Sobic003G203300 Sobic010G171600 Sobic010G171600 Sobic006G233700--Sobic010G171600 Sobic003G070900 Sobic003G070900 Sobic006G233700--Sobic003G070900 Sobic001G219700 Sobic001G219700 Sobic006G233700--Sobic001G219700 Sobic006G232600--Sobic009G170200 Sobic007G087100 Sobic007G087100 Sobic006G232600--Sobic007G087100 Sobic003G003450 Sobic003G003450 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic009G073900 Sobic009G073900 Sobic006G232600--Sobic009G073900 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic001G077300 Sobic001G077300 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic010G110400--Sobic006G233700 Sobic010G110400--Sobic003G203300 Sobic010G110400--Sobic009G170200 Sobic002G198300 Sobic002G198300 Sobic010G110400--Sobic002G198300 Sobic010G110400--Sobic001G500600 Sobic004G300100 Sobic004G300100 Sobic010G110400--Sobic004G300100 Sobic010G110400--Sobic003G070900 Sobic010G110400--Sobic006G197300 Sobic010G110400--Sobic001G378100 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic001G060500--Sobic006G233700 Sobic004G179400 Sobic004G179400 Sobic001G060500--Sobic004G179400 Sobic002G073200 Sobic002G073200 Sobic001G060500--Sobic002G073200 Sobic003G190000 Sobic003G190000 Sobic001G060500--Sobic003G190000 Sobic001G060500--Sobic003G203300 Sobic002G173100 Sobic002G173100 Sobic001G060500--Sobic002G173100 Sobic001G060500--Sobic010G110400 Sobic003G125900 Sobic003G125900 Sobic001G060500--Sobic003G125900 Sobic003G108900 Sobic003G108900 Sobic001G060500--Sobic003G108900 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic009G093100 Sobic009G093100 Sobic003G203300--Sobic009G093100 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic003G203300--Sobic002G081400 Sobic003G203300--Sobic006G233700 Sobic004G207400 Sobic004G207400 Sobic003G203300--Sobic004G207400 Sobic010G171600--Sobic001G500600 Sobic010G171600--Sobic006G233700 Sobic003G233700 Sobic003G233700 Sobic010G171600--Sobic003G233700 Sobic010G171600--Sobic007G103400 Sobic001G516901 Sobic001G516901 Sobic010G171600--Sobic001G516901 Sobic010G171600--Sobic006G197300 Sobic010G171600--Sobic008G074000 Sobic010G171600--Sobic003G287900 Sobic010G171600--Sobic004G336200 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic001G219700--Sobic006G233700 Sobic004G026500 Sobic004G026500 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic008G081900 Sobic008G081900 Sobic001G219700--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic002G349100 Sobic002G349100 Sobic001G219700--Sobic002G349100
Octagon: transcription factors


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