Gene annotation
Transcriptome id Sobic.004G207400.1
Synonym Sb04g025290, CLB4, CSB3, GCPE, ISPG, HDS
Functional annotation hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed
UniProt C5XX72
Pfam PF04551
Panther DB PTHR30454
NCBI CDD -
KEGG Orthology K03526; gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
Gene Ontology GO:0016114; terpenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G60600 : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase
RAP-DB (Rice) LOC_Os02g39160.1 : hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a021261
Brachypodium KQK00234 , PNT68993
Barley HORVU6Hr1G054940.1 , HORVU6Hr1G054940.2 , HORVU6Hr1G054940.3 , HORVU6Hr1G054940.4 , HORVU6Hr1G054940.5 , HORVU6Hr1G054940.6 , HORVU6Hr1G054940.7 , HORVU6Hr1G054940.8
Wheat TraesCS6D02G197800 , TraesCS6A02G215500 , TraesCS6B02G245100
Populus PNT42397 , PNT42398


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cDNA sequences
Sobic.004G207400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
2 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
3 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
4 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
5 Sobic.003G203300 stress regulated protein, putative, expressed -
6 Sobic.002G225100 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
7 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
8 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
9 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
10 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
11 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
12 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
13 Sobic.006G197300 expressed protein -
14 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
15 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
16 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
17 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
18 Sobic.003G264800 expressed protein -
19 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
20 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant


Gene co-expression network
sample Sobic004G207400 Sobic004G207400 Sobic002G072400 Sobic002G072400 Sobic004G207400--Sobic002G072400 Sobic006G232600 Sobic006G232600 Sobic004G207400--Sobic006G232600 Sobic004G238200 Sobic004G238200 Sobic004G207400--Sobic004G238200 Sobic009G170200 Sobic009G170200 Sobic004G207400--Sobic009G170200 Sobic003G203300 Sobic003G203300 Sobic004G207400--Sobic003G203300 Sobic002G225100 Sobic002G225100 Sobic004G207400--Sobic002G225100 Sobic004G300100 Sobic004G300100 Sobic004G207400--Sobic004G300100 Sobic004G281900 Sobic004G281900 Sobic004G207400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic004G207400--Sobic007G166200 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic002G072400--Sobic004G238200 Sobic002G129400 Sobic002G129400 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic002G072400--Sobic004G281900 Sobic002G072400--Sobic007G166200 Sobic002G081400 Sobic002G081400 Sobic002G072400--Sobic002G081400 Sobic006G232600--Sobic009G170200 Sobic007G087100 Sobic007G087100 Sobic006G232600--Sobic007G087100 Sobic003G003450 Sobic003G003450 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic009G073900 Sobic009G073900 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic001G077300 Sobic001G077300 Sobic006G232600--Sobic001G077300 Sobic006G232600--Sobic002G081400 Sobic003G232700 Sobic003G232700 Sobic004G238200--Sobic003G232700 Sobic004G238200--Sobic004G207400 Sobic001G500600 Sobic001G500600 Sobic004G238200--Sobic001G500600 Sobic005G084500 Sobic005G084500 Sobic004G238200--Sobic005G084500 Sobic001G516901 Sobic001G516901 Sobic004G238200--Sobic001G516901 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic006G197300 Sobic006G197300 Sobic004G238200--Sobic006G197300 Sobic004G238200--Sobic006G232600 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic009G093100 Sobic009G093100 Sobic003G203300--Sobic009G093100 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic003G203300--Sobic002G081400 Sobic003G203300--Sobic006G233700 Sobic003G203300--Sobic004G207400 Sobic006G212800 Sobic006G212800 Sobic002G225100--Sobic006G212800 Sobic002G225100--Sobic004G207400 Sobic009G207900 Sobic009G207900 Sobic002G225100--Sobic009G207900 Sobic002G225100--Sobic009G170200 Sobic001G276300 Sobic001G276300 Sobic002G225100--Sobic001G276300 Sobic001G411400 Sobic001G411400 Sobic002G225100--Sobic001G411400 Sobic007G135800 Sobic007G135800 Sobic002G225100--Sobic007G135800 Sobic002G225100--Sobic006G232600 Sobic007G107700 Sobic007G107700 Sobic002G225100--Sobic007G107700 Sobic010G231500 Sobic010G231500 Sobic004G300100--Sobic010G231500 Sobic002G356900 Sobic002G356900 Sobic004G300100--Sobic002G356900 Sobic004G300100--Sobic004G317700 Sobic004G300100--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic004G300100--Sobic004G271600 Sobic004G300100--Sobic009G170200 Sobic002G132400 Sobic002G132400 Sobic004G300100--Sobic002G132400 Sobic004G165900 Sobic004G165900 Sobic004G300100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G300100--Sobic004G252500 Sobic004G281900--Sobic007G087100 Sobic003G328100 Sobic003G328100 Sobic004G281900--Sobic003G328100 Sobic004G281900--Sobic003G070900 Sobic006G102000 Sobic006G102000 Sobic004G281900--Sobic006G102000 Sobic004G281900--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic004G281900--Sobic001G005200 Sobic004G281900--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic004G281900--Sobic001G436400 Sobic004G281900--Sobic002G072400 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic007G166200--Sobic004G207400 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800
Octagon: transcription factors


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