Gene annotation
Transcriptome id Sobic.002G072400.1
Synonym SPC1, Sb02g006100, ZDS, PDE181
Functional annotation zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed
UniProt A9UKC6 , A0A1B6Q9T0
Pfam PF13450
Panther DB PTHR10742 PTHR10742:SF274
NCBI CDD KOG0029; Amine oxidase
KEGG Orthology K00514; ZDS, zeta-carotene desaturase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04870 : zeta-carotene desaturase
RAP-DB (Rice) LOC_Os07g10490.1 : zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045351
Brachypodium KQK20416
Barley HORVU2Hr1G049700.2 , HORVU2Hr1G049700.3 , HORVU2Hr1G049700.8 , HORVU2Hr1G049700.1 , HORVU2Hr1G049700.4 , HORVU2Hr1G049700.5 , HORVU2Hr1G049700.6 , HORVU2Hr1G049700.7
Wheat TraesCS2B02G253100 , TraesCS2B02G253100 , TraesCS2A02G238400 , TraesCS2A02G238400 , TraesCS2D02G236500 , TraesCS2D02G236500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
2 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
3 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
4 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
5 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.004G307100 M16 domain containing zinc peptidase, putative, expressed K06972: PITRM1, PreP, presequence protease
7 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
8 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
9 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
11 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
12 Sobic.003G264800 expressed protein -
13 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
14 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
15 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
16 Sobic.007G087100 pentatricopeptide, putative, expressed -
17 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
18 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
19 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
20 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I


Gene co-expression network
sample Sobic002G072400 Sobic002G072400 Sobic004G207400 Sobic004G207400 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic004G238200 Sobic004G238200 Sobic002G072400--Sobic004G238200 Sobic002G129400 Sobic002G129400 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic002G072400--Sobic007G166200 Sobic002G081400 Sobic002G081400 Sobic002G072400--Sobic002G081400 Sobic004G207400--Sobic002G072400 Sobic006G232600 Sobic006G232600 Sobic004G207400--Sobic006G232600 Sobic004G207400--Sobic004G238200 Sobic009G170200 Sobic009G170200 Sobic004G207400--Sobic009G170200 Sobic003G203300 Sobic003G203300 Sobic004G207400--Sobic003G203300 Sobic002G225100 Sobic002G225100 Sobic004G207400--Sobic002G225100 Sobic004G300100 Sobic004G300100 Sobic004G207400--Sobic004G300100 Sobic004G207400--Sobic004G281900 Sobic004G207400--Sobic007G166200 Sobic002G349100--Sobic002G072400 Sobic002G349100--Sobic002G129400 Sobic002G349100--Sobic004G317700 Sobic008G081900 Sobic008G081900 Sobic002G349100--Sobic008G081900 Sobic002G349100--Sobic004G207400 Sobic001G219700 Sobic001G219700 Sobic002G349100--Sobic001G219700 Sobic002G349100--Sobic004G238200 Sobic009G162600 Sobic009G162600 Sobic002G349100--Sobic009G162600 Sobic002G349100--Sobic004G300100 Sobic004G317700--Sobic002G081400 Sobic002G356900 Sobic002G356900 Sobic004G317700--Sobic002G356900 Sobic004G317700--Sobic004G300100 Sobic007G087100 Sobic007G087100 Sobic004G317700--Sobic007G087100 Sobic009G073900 Sobic009G073900 Sobic004G317700--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic004G317700--Sobic003G003450 Sobic002G060800 Sobic002G060800 Sobic004G317700--Sobic002G060800 Sobic004G317700--Sobic002G072400 Sobic007G124500 Sobic007G124500 Sobic004G317700--Sobic007G124500 Sobic003G232700 Sobic003G232700 Sobic004G238200--Sobic003G232700 Sobic004G238200--Sobic004G207400 Sobic001G500600 Sobic001G500600 Sobic004G238200--Sobic001G500600 Sobic005G084500 Sobic005G084500 Sobic004G238200--Sobic005G084500 Sobic001G516901 Sobic001G516901 Sobic004G238200--Sobic001G516901 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic006G197300 Sobic006G197300 Sobic004G238200--Sobic006G197300 Sobic004G238200--Sobic006G232600 Sobic002G129400--Sobic007G166200 Sobic002G129400--Sobic008G081900 Sobic002G129400--Sobic002G072400 Sobic002G129400--Sobic002G349100 Sobic002G129400--Sobic002G081400 Sobic009G093100 Sobic009G093100 Sobic002G129400--Sobic009G093100 Sobic002G129400--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic002G129400--Sobic006G065100 Sobic002G129400--Sobic001G219700 Sobic004G307100--Sobic002G072400 Sobic004G307100--Sobic008G081900 Sobic004G307100--Sobic002G129400 Sobic004G307100--Sobic004G300100 Sobic004G307100--Sobic007G166200 Sobic004G165900 Sobic004G165900 Sobic004G307100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G307100--Sobic004G252500 Sobic003G070900 Sobic003G070900 Sobic004G307100--Sobic003G070900 Sobic001G118400 Sobic001G118400 Sobic004G307100--Sobic001G118400 Sobic004G281900--Sobic007G087100 Sobic003G328100 Sobic003G328100 Sobic004G281900--Sobic003G328100 Sobic004G281900--Sobic003G070900 Sobic006G102000 Sobic006G102000 Sobic004G281900--Sobic006G102000 Sobic004G281900--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic004G281900--Sobic001G005200 Sobic004G281900--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic004G281900--Sobic001G436400 Sobic004G281900--Sobic002G072400 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic007G166200--Sobic004G207400 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic002G081400--Sobic001G077300 Sobic002G081400--Sobic003G003450 Sobic006G090100 Sobic006G090100 Sobic002G081400--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic002G081400--Sobic001G509200 Sobic002G081400--Sobic007G124500 Sobic002G081400--Sobic009G170200
Octagon: transcription factors


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