Gene annotation
Transcriptome id Sobic.004G307100.1
Synonym PREP1, ATZNMP, Sb04g033980, ATPREP1
Functional annotation M16 domain containing zinc peptidase, putative, expressed
UniProt A0A194YTJ5
Pfam PF00675 PF05193 PF08367
Panther DB PTHR11851 PTHR11851:SF68
NCBI CDD -
KEGG Orthology K06972; PITRM1, PreP, presequence protease
Gene Ontology GO:0006508; proteolysis


Orthologs (automatic annotation)
TAIR AT3G19170 : presequence protease 1
RAP-DB (Rice) LOC_Os02g52390.1 : M16 domain containing zinc peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a022202
Brachypodium KQK01779
Barley HORVU6Hr1G077210.7 , HORVU6Hr1G077210.6 , HORVU6Hr1G077210.5 , HORVU6Hr1G077210.4 , HORVU6Hr1G077210.3 , HORVU6Hr1G077210.2 , HORVU6Hr1G077210.1 , HORVU6Hr1G077210.8
Wheat TraesCS6D02G292700 , TraesCS6A02G313400 , TraesCS6A02G313400 , TraesCS6B02G343300 , TraesCS6B02G343300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
2 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
3 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
5 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
6 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
7 Sobic.004G252500 OsProtIV1 - Putative Protease IV homologue@ Domain 2 is a SPH, expressed K04773: protease IV
8 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
9 Sobic.001G118400 expressed protein -
10 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
11 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
12 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
13 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
14 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
15 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
16 Sobic.006G025400 - -
17 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
18 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
20 Sobic.008G037800 ACT domain containing protein, expressed -


Gene co-expression network
sample Sobic004G307100 Sobic004G307100 Sobic002G072400 Sobic002G072400 Sobic004G307100--Sobic002G072400 Sobic008G081900 Sobic008G081900 Sobic004G307100--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic004G307100--Sobic002G129400 Sobic004G300100 Sobic004G300100 Sobic004G307100--Sobic004G300100 Sobic007G166200 Sobic007G166200 Sobic004G307100--Sobic007G166200 Sobic004G165900 Sobic004G165900 Sobic004G307100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G307100--Sobic004G252500 Sobic003G070900 Sobic003G070900 Sobic004G307100--Sobic003G070900 Sobic001G118400 Sobic001G118400 Sobic004G307100--Sobic001G118400 Sobic004G207400 Sobic004G207400 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic004G238200 Sobic004G238200 Sobic002G072400--Sobic004G238200 Sobic002G072400--Sobic002G129400 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic002G072400--Sobic007G166200 Sobic002G081400 Sobic002G081400 Sobic002G072400--Sobic002G081400 Sobic008G081900--Sobic002G129400 Sobic001G219700 Sobic001G219700 Sobic008G081900--Sobic001G219700 Sobic008G081900--Sobic004G307100 Sobic010G035500 Sobic010G035500 Sobic008G081900--Sobic010G035500 Sobic008G081900--Sobic007G166200 Sobic007G169300 Sobic007G169300 Sobic008G081900--Sobic007G169300 Sobic004G300000 Sobic004G300000 Sobic008G081900--Sobic004G300000 Sobic004G026500 Sobic004G026500 Sobic008G081900--Sobic004G026500 Sobic006G030400 Sobic006G030400 Sobic008G081900--Sobic006G030400 Sobic002G129400--Sobic007G166200 Sobic002G129400--Sobic008G081900 Sobic002G129400--Sobic002G072400 Sobic002G129400--Sobic002G349100 Sobic002G129400--Sobic002G081400 Sobic009G093100 Sobic009G093100 Sobic002G129400--Sobic009G093100 Sobic003G203300 Sobic003G203300 Sobic002G129400--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic002G129400--Sobic006G065100 Sobic002G129400--Sobic001G219700 Sobic010G231500 Sobic010G231500 Sobic004G300100--Sobic010G231500 Sobic002G356900 Sobic002G356900 Sobic004G300100--Sobic002G356900 Sobic004G300100--Sobic004G317700 Sobic004G300100--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic004G300100--Sobic004G271600 Sobic009G170200 Sobic009G170200 Sobic004G300100--Sobic009G170200 Sobic002G132400 Sobic002G132400 Sobic004G300100--Sobic002G132400 Sobic004G300100--Sobic004G165900 Sobic004G300100--Sobic004G252500 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic007G166200--Sobic004G207400 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic004G165900--Sobic004G252500 Sobic003G108900 Sobic003G108900 Sobic004G165900--Sobic003G108900 Sobic004G165900--Sobic010G231500 Sobic006G097500 Sobic006G097500 Sobic004G165900--Sobic006G097500 Sobic004G165900--Sobic001G118400 Sobic001G368600 Sobic001G368600 Sobic004G165900--Sobic001G368600 Sobic009G004100 Sobic009G004100 Sobic004G165900--Sobic009G004100 Sobic006G025400 Sobic006G025400 Sobic004G165900--Sobic006G025400 Sobic002G061900 Sobic002G061900 Sobic004G165900--Sobic002G061900 Sobic004G252500--Sobic004G165900 Sobic004G252500--Sobic003G108900 Sobic004G252500--Sobic001G118400 Sobic004G252500--Sobic004G300100 Sobic004G252500--Sobic010G231500 Sobic004G252500--Sobic006G025400 Sobic004G252500--Sobic003G070900 Sobic004G252500--Sobic009G004100 Sobic003G125900 Sobic003G125900 Sobic004G252500--Sobic003G125900 Sobic002G133900 Sobic002G133900 Sobic003G070900--Sobic002G133900 Sobic003G287900 Sobic003G287900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G094350 Sobic003G094350 Sobic003G070900--Sobic003G094350 Sobic003G070900--Sobic001G118400 Sobic001G500600 Sobic001G500600 Sobic003G070900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic006G155500 Sobic006G155500 Sobic001G118400--Sobic006G155500 Sobic001G118400--Sobic003G070900 Sobic003G328100 Sobic003G328100 Sobic001G118400--Sobic003G328100 Sobic001G118400--Sobic004G165900 Sobic001G286600 Sobic001G286600 Sobic001G118400--Sobic001G286600 Sobic001G118400--Sobic002G061900 Sobic010G056300 Sobic010G056300 Sobic001G118400--Sobic010G056300 Sobic001G118400--Sobic004G252500 Sobic006G140700 Sobic006G140700 Sobic001G118400--Sobic006G140700
Octagon: transcription factors


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