Gene annotation
Transcriptome id Sobic.008G081900.1,Sobic.008G081900.2
Synonym CLPC1, DCA1, Sb08g007750, CLPC, ATHSP93-V, HSP93-V
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed
UniProt A0A1B6PCG3
Pfam PF02151 PF07728 PF10431 PF00004 PF02861
Panther DB PTHR11638 PTHR11638:SF96
NCBI CDD -
KEGG Orthology K03696; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology GO:0005515; protein binding GO:0016887ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G50920 : CLPC homologue 1
RAP-DB (Rice) LOC_Os12g12850.2,LOC_Os12g12850.1 : ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a055939 , Zm00025a009027 , Zm00025a011670 , Zm00025a054495
Brachypodium KQJ91804
Barley HORVU5Hr1G031470.4 , HORVU5Hr1G031470.8 , HORVU5Hr1G031470.2 , HORVU5Hr1G031470.3 , HORVU5Hr1G031470.1 , HORVU5Hr1G031470.6 , HORVU5Hr1G031470.7 , HORVU5Hr1G031470.5
Wheat TraesCS5B02G112500 , TraesCS5D02G118700 , TraesCS5A02G118900
Populus -


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cDNA sequences
Sobic.008G081900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.001G219700 pentatricopeptide, putative, expressed -
3 Sobic.004G307100 M16 domain containing zinc peptidase, putative, expressed K06972: PITRM1, PreP, presequence protease
4 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
5 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
6 Sobic.007G169300 expressed protein -
7 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
8 Sobic.004G026500 expressed protein -
9 Sobic.006G030400 xa21, putative, expressed -
10 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
11 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
12 Sobic.003G203300 stress regulated protein, putative, expressed -
13 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
14 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
15 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
16 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
17 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
18 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
19 Sobic.007G185300 - -
20 Sobic.007G227700 expressed protein -


Gene co-expression network
sample Sobic008G081900 Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic008G081900--Sobic002G129400 Sobic001G219700 Sobic001G219700 Sobic008G081900--Sobic001G219700 Sobic004G307100 Sobic004G307100 Sobic008G081900--Sobic004G307100 Sobic010G035500 Sobic010G035500 Sobic008G081900--Sobic010G035500 Sobic007G166200 Sobic007G166200 Sobic008G081900--Sobic007G166200 Sobic007G169300 Sobic007G169300 Sobic008G081900--Sobic007G169300 Sobic004G300000 Sobic004G300000 Sobic008G081900--Sobic004G300000 Sobic004G026500 Sobic004G026500 Sobic008G081900--Sobic004G026500 Sobic006G030400 Sobic006G030400 Sobic008G081900--Sobic006G030400 Sobic002G129400--Sobic007G166200 Sobic002G129400--Sobic008G081900 Sobic002G072400 Sobic002G072400 Sobic002G129400--Sobic002G072400 Sobic002G349100 Sobic002G349100 Sobic002G129400--Sobic002G349100 Sobic002G081400 Sobic002G081400 Sobic002G129400--Sobic002G081400 Sobic009G093100 Sobic009G093100 Sobic002G129400--Sobic009G093100 Sobic003G203300 Sobic003G203300 Sobic002G129400--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic002G129400--Sobic006G065100 Sobic002G129400--Sobic001G219700 Sobic006G233700 Sobic006G233700 Sobic001G219700--Sobic006G233700 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic001G219700--Sobic008G081900 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic001G219700--Sobic002G349100 Sobic004G307100--Sobic002G072400 Sobic004G307100--Sobic008G081900 Sobic004G307100--Sobic002G129400 Sobic004G300100 Sobic004G300100 Sobic004G307100--Sobic004G300100 Sobic004G307100--Sobic007G166200 Sobic004G165900 Sobic004G165900 Sobic004G307100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G307100--Sobic004G252500 Sobic003G070900 Sobic003G070900 Sobic004G307100--Sobic003G070900 Sobic001G118400 Sobic001G118400 Sobic004G307100--Sobic001G118400 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic006G214700 Sobic006G214700 Sobic010G035500--Sobic006G214700 Sobic002G025700 Sobic002G025700 Sobic010G035500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G035500--Sobic006G201100 Sobic009G141400 Sobic009G141400 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic010G035500--Sobic008G081900 Sobic006G193200 Sobic006G193200 Sobic010G035500--Sobic006G193200 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic004G207400 Sobic004G207400 Sobic007G166200--Sobic004G207400 Sobic009G170200 Sobic009G170200 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic007G227700 Sobic007G227700 Sobic007G169300--Sobic007G227700 Sobic007G169300--Sobic008G081900 Sobic007G169300--Sobic006G030400 Sobic002G193100 Sobic002G193100 Sobic007G169300--Sobic002G193100 Sobic007G169300--Sobic002G129400 Sobic009G011600 Sobic009G011600 Sobic007G169300--Sobic009G011600 Sobic007G169300--Sobic002G349100 Sobic007G169300--Sobic004G026500 Sobic010G058200 Sobic010G058200 Sobic007G169300--Sobic010G058200 Sobic004G300000--Sobic010G035500 Sobic004G300000--Sobic002G025700 Sobic004G300000--Sobic006G193200 Sobic004G300000--Sobic006G214700 Sobic003G108900 Sobic003G108900 Sobic004G300000--Sobic003G108900 Sobic010G197000 Sobic010G197000 Sobic004G300000--Sobic010G197000 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic002G354600 Sobic002G354600 Sobic004G300000--Sobic002G354600 Sobic008G172300 Sobic008G172300 Sobic004G026500--Sobic008G172300 Sobic004G026500--Sobic001G124100 Sobic009G193500 Sobic009G193500 Sobic004G026500--Sobic009G193500 Sobic004G026500--Sobic001G219700 Sobic001G072700 Sobic001G072700 Sobic004G026500--Sobic001G072700 Sobic002G339300 Sobic002G339300 Sobic004G026500--Sobic002G339300 Sobic004G026500--Sobic003G203300 Sobic004G026500--Sobic007G227700 Sobic002G276100 Sobic002G276100 Sobic004G026500--Sobic002G276100 Sobic006G030400--Sobic004G026500 Sobic006G030400--Sobic008G081900 Sobic006G030400--Sobic007G169300 Sobic006G030400--Sobic010G197000 Sobic005G110532 Sobic005G110532 Sobic006G030400--Sobic005G110532 Sobic003G190000 Sobic003G190000 Sobic006G030400--Sobic003G190000 Sobic006G030400--Sobic003G203300 Sobic006G030400--Sobic001G219700 Sobic005G075100 Sobic005G075100 Sobic006G030400--Sobic005G075100
Octagon: transcription factors


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