Gene annotation
Transcriptome id Sobic.010G035500.1
Synonym CPISCA, Sb10g003200, ATCPISCA
Functional annotation IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed
UniProt C5Z3X4
Pfam PF01521
Panther DB PTHR10072 PTHR10072:SF48
NCBI CDD KOG1120; Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain)
KEGG Orthology K13628; iron-sulfur cluster assembly protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10500 : chloroplast-localized ISCA-like protein
RAP-DB (Rice) LOC_Os06g05400.1 : IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050045 , Zm00025a041498
Brachypodium PNT76654 , KQK19878
Barley HORVU7Hr1G021280.2 , HORVU7Hr1G021280.3 , HORVU7Hr1G021280.1 , HORVU7Hr1G021280.4 , HORVU7Hr1G021280.5
Wheat TraesCS4A02G396600 , TraesCS4A02G396600 , TraesCS7A02G096700 , TraesCS7D02G092800 , TraesCS7A02G096700
Populus -


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cDNA sequences
Sobic.010G035500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
2 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
3 Sobic.006G214700 APO, putative, expressed -
4 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
5 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
6 Sobic.009G141400 transcriptional regulator, putative, expressed -
7 Sobic.009G019100 expressed protein K13473: chitin elicitor-binding protein
8 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
10 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.002G136100 genetic modifier, putative, expressed -
12 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
13 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
14 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
15 Sobic.003G014300 expressed protein -
16 Sobic.003G359500 expressed protein -
17 Sobic.003G306700 acetamidase, putative, expressed K01455: formamidase
18 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
20 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G035500 Sobic010G035500 Sobic004G300000 Sobic004G300000 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic006G214700 Sobic006G214700 Sobic010G035500--Sobic006G214700 Sobic002G025700 Sobic002G025700 Sobic010G035500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G035500--Sobic006G201100 Sobic009G141400 Sobic009G141400 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic006G193200 Sobic006G193200 Sobic010G035500--Sobic006G193200 Sobic004G300000--Sobic010G035500 Sobic004G300000--Sobic002G025700 Sobic004G300000--Sobic006G193200 Sobic004G300000--Sobic006G214700 Sobic003G108900 Sobic003G108900 Sobic004G300000--Sobic003G108900 Sobic010G197000 Sobic010G197000 Sobic004G300000--Sobic010G197000 Sobic004G165900 Sobic004G165900 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic002G354600 Sobic002G354600 Sobic004G300000--Sobic002G354600 Sobic001G029200--Sobic010G035500 Sobic001G029200--Sobic004G300000 Sobic001G029200--Sobic009G019100 Sobic001G029200--Sobic008G081900 Sobic009G213800 Sobic009G213800 Sobic001G029200--Sobic009G213800 Sobic007G227700 Sobic007G227700 Sobic001G029200--Sobic007G227700 Sobic002G193100 Sobic002G193100 Sobic001G029200--Sobic002G193100 Sobic004G026500 Sobic004G026500 Sobic001G029200--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic001G029200--Sobic002G339300 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic001G450600 Sobic001G450600 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic004G333400 Sobic004G333400 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic002G025700--Sobic004G300000 Sobic004G089200 Sobic004G089200 Sobic002G025700--Sobic004G089200 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic010G207500 Sobic010G207500 Sobic002G025700--Sobic010G207500 Sobic002G025700--Sobic002G354600 Sobic002G025700--Sobic004G165900 Sobic010G205700 Sobic010G205700 Sobic002G025700--Sobic010G205700 Sobic002G025700--Sobic006G193200 Sobic006G201100--Sobic010G035500 Sobic006G201100--Sobic006G214700 Sobic002G046900 Sobic002G046900 Sobic006G201100--Sobic002G046900 Sobic006G201100--Sobic010G207500 Sobic006G201100--Sobic004G300000 Sobic006G201100--Sobic006G110900 Sobic003G306700 Sobic003G306700 Sobic006G201100--Sobic003G306700 Sobic004G164200 Sobic004G164200 Sobic006G201100--Sobic004G164200 Sobic006G201100--Sobic009G141400 Sobic009G141400--Sobic006G214700 Sobic009G141400--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic009G141400--Sobic006G155500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic009G141400--Sobic008G063200 Sobic009G141400--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic009G141400--Sobic001G286600 Sobic009G019100--Sobic009G213800 Sobic009G019100--Sobic010G035500 Sobic009G019100--Sobic001G029200 Sobic009G019100--Sobic002G046900 Sobic009G019100--Sobic004G300000 Sobic005G175500 Sobic005G175500 Sobic009G019100--Sobic005G175500 Sobic009G019100--Sobic008G081900 Sobic009G019100--Sobic003G359500 Sobic009G019100--Sobic003G306700 Sobic002G129400 Sobic002G129400 Sobic008G081900--Sobic002G129400 Sobic001G219700 Sobic001G219700 Sobic008G081900--Sobic001G219700 Sobic004G307100 Sobic004G307100 Sobic008G081900--Sobic004G307100 Sobic008G081900--Sobic010G035500 Sobic007G166200 Sobic007G166200 Sobic008G081900--Sobic007G166200 Sobic007G169300 Sobic007G169300 Sobic008G081900--Sobic007G169300 Sobic008G081900--Sobic004G300000 Sobic008G081900--Sobic004G026500 Sobic006G030400 Sobic006G030400 Sobic008G081900--Sobic006G030400 Sobic006G193200--Sobic004G300000 Sobic006G193200--Sobic004G165900 Sobic006G193200--Sobic006G214700 Sobic001G118400 Sobic001G118400 Sobic006G193200--Sobic001G118400 Sobic006G193200--Sobic010G076800 Sobic006G193200--Sobic002G331800 Sobic006G140700 Sobic006G140700 Sobic006G193200--Sobic006G140700 Sobic003G328100 Sobic003G328100 Sobic006G193200--Sobic003G328100 Sobic006G193200--Sobic010G035500
Octagon: transcription factors


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