Gene annotation
Transcriptome id Sobic.006G193200.3,Sobic.006G193200.2
Synonym ATGLR3.3, GLR3.3
Functional annotation glutamate receptor, putative, expressed
UniProt O49234 , A0A1B6PMU7
Pfam PF00497 PF13458 PF00060
Panther DB PTHR18966 PTHR18966:SF245
NCBI CDD KOG1052; Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
KEGG Orthology K05387; glutamate receptor, ionotropic, plant
Gene Ontology GO:0016020; membrane GO:0004970ionotropic glutamate receptor activity


Orthologs (automatic annotation)
TAIR AT1G42540 : glutamate receptor 3.3
RAP-DB (Rice) LOC_Os04g49570.2 : glutamate receptor, putative, expressed
MaizeGDB (Corn) Zm00025a010052
Brachypodium KQJ84247 , KQK21239
Barley HORVU2Hr1G104920.9 , HORVU2Hr1G104920.1 , HORVU2Hr1G104920.2 , HORVU2Hr1G104920.3 , HORVU2Hr1G104920.4 , HORVU2Hr1G104920.5 , HORVU2Hr1G104920.6 , HORVU2Hr1G104920.7 , HORVU2Hr1G104920.12 , HORVU2Hr1G104920.13 , HORVU2Hr1G104920.10 , HORVU2Hr1G104920.11 , HORVU2Hr1G104920.16 , HORVU2Hr1G104920.17 , HORVU2Hr1G104920.14 , HORVU2Hr1G104920.15 , HORVU2Hr1G104920.18
Wheat TraesCS2D02G455600 , TraesCS2D02G455600 , TraesCS2D02G455600 , TraesCS2A02G455200 , TraesCS2B02G477300 , TraesCS2B02G477300 , TraesCS2B02G477300 , TraesCS2B02G477300 , TraesCS2B02G477300 , TraesCS2A02G455200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G193200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
2 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
3 Sobic.006G214700 APO, putative, expressed -
4 Sobic.001G118400 expressed protein -
5 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
6 Sobic.002G331800 PPR repeat containing protein, expressed -
7 Sobic.006G140700 "aldo/keto reductase (AKR) family protein, up-regulated under drought stress , maped into a unique stay green QTL(QSTG3_6)"(PubMedID : 24655390)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.003G328100 expressed protein -
9 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
10 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
11 Sobic.006G155500 expressed protein -
12 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.003G108900 -(PubMedID : 26465154)@peptidase, putative, expressed -
14 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
15 Sobic.004G252500 OsProtIV1 - Putative Protease IV homologue@ Domain 2 is a SPH, expressed K04773: protease IV
16 Sobic.001G535700 stress responsive A/B Barrel domain containing protein, expressed -
17 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
18 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
19 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G193200 Sobic006G193200 Sobic004G300000 Sobic004G300000 Sobic006G193200--Sobic004G300000 Sobic004G165900 Sobic004G165900 Sobic006G193200--Sobic004G165900 Sobic006G214700 Sobic006G214700 Sobic006G193200--Sobic006G214700 Sobic001G118400 Sobic001G118400 Sobic006G193200--Sobic001G118400 Sobic010G076800 Sobic010G076800 Sobic006G193200--Sobic010G076800 Sobic002G331800 Sobic002G331800 Sobic006G193200--Sobic002G331800 Sobic006G140700 Sobic006G140700 Sobic006G193200--Sobic006G140700 Sobic003G328100 Sobic003G328100 Sobic006G193200--Sobic003G328100 Sobic010G035500 Sobic010G035500 Sobic006G193200--Sobic010G035500 Sobic004G300000--Sobic010G035500 Sobic002G025700 Sobic002G025700 Sobic004G300000--Sobic002G025700 Sobic004G300000--Sobic006G193200 Sobic004G300000--Sobic006G214700 Sobic003G108900 Sobic003G108900 Sobic004G300000--Sobic003G108900 Sobic010G197000 Sobic010G197000 Sobic004G300000--Sobic010G197000 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic002G354600 Sobic002G354600 Sobic004G300000--Sobic002G354600 Sobic004G252500 Sobic004G252500 Sobic004G165900--Sobic004G252500 Sobic004G165900--Sobic003G108900 Sobic010G231500 Sobic010G231500 Sobic004G165900--Sobic010G231500 Sobic006G097500 Sobic006G097500 Sobic004G165900--Sobic006G097500 Sobic004G165900--Sobic001G118400 Sobic001G368600 Sobic001G368600 Sobic004G165900--Sobic001G368600 Sobic009G004100 Sobic009G004100 Sobic004G165900--Sobic009G004100 Sobic006G025400 Sobic006G025400 Sobic004G165900--Sobic006G025400 Sobic002G061900 Sobic002G061900 Sobic004G165900--Sobic002G061900 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic001G450600 Sobic001G450600 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic004G333400 Sobic004G333400 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic008G063200 Sobic008G063200 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic006G155500 Sobic006G155500 Sobic001G118400--Sobic006G155500 Sobic003G070900 Sobic003G070900 Sobic001G118400--Sobic003G070900 Sobic001G118400--Sobic003G328100 Sobic001G118400--Sobic004G165900 Sobic001G286600 Sobic001G286600 Sobic001G118400--Sobic001G286600 Sobic001G118400--Sobic002G061900 Sobic010G056300 Sobic010G056300 Sobic001G118400--Sobic010G056300 Sobic001G118400--Sobic004G252500 Sobic001G118400--Sobic006G140700 Sobic010G076800--Sobic002G331800 Sobic001G006000 Sobic001G006000 Sobic010G076800--Sobic001G006000 Sobic007G076900 Sobic007G076900 Sobic010G076800--Sobic007G076900 Sobic010G076800--Sobic006G214700 Sobic010G076800--Sobic008G063200 Sobic010G076800--Sobic003G253300 Sobic010G076800--Sobic006G193200 Sobic003G037300 Sobic003G037300 Sobic010G076800--Sobic003G037300 Sobic010G076800--Sobic003G179400 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic003G439600 Sobic003G439600 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic002G331800--Sobic010G183400 Sobic002G331800--Sobic001G118400 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic003G245800 Sobic003G245800 Sobic002G331800--Sobic003G245800 Sobic006G140700--Sobic006G025400 Sobic006G140700--Sobic003G328100 Sobic007G169100 Sobic007G169100 Sobic006G140700--Sobic007G169100 Sobic006G140700--Sobic002G061900 Sobic006G140700--Sobic001G118400 Sobic006G140700--Sobic004G165900 Sobic006G140700--Sobic006G097500 Sobic006G140700--Sobic006G155500 Sobic006G140700--Sobic010G231500 Sobic003G328100--Sobic007G169100 Sobic003G328100--Sobic001G118400 Sobic003G328100--Sobic006G155500 Sobic003G328100--Sobic006G140700 Sobic007G107700 Sobic007G107700 Sobic003G328100--Sobic007G107700 Sobic003G328100--Sobic001G286600 Sobic003G328100--Sobic010G231500 Sobic004G281900 Sobic004G281900 Sobic003G328100--Sobic004G281900 Sobic003G328100--Sobic006G097500 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic010G035500--Sobic006G214700 Sobic010G035500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G035500--Sobic006G201100 Sobic009G141400 Sobic009G141400 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic010G035500--Sobic006G193200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.