Gene annotation
Transcriptome id Sobic.010G056300.1
Synonym Sb10g004910
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z509
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF664
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48730 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g07550.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042845
Brachypodium KQK19404
Barley HORVU7Hr1G027800.2 , HORVU7Hr1G027800.3 , HORVU7Hr1G027800.1 , HORVU7Hr1G027800.6 , HORVU7Hr1G027800.7 , HORVU7Hr1G027800.4 , HORVU7Hr1G027800.5 , HORVU7Hr1G027800.8
Wheat TraesCS7D02G132643 , TraesCS7A02G133100 , TraesCS7B02G033900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G535700 stress responsive A/B Barrel domain containing protein, expressed -
2 Sobic.001G118400 expressed protein -
3 Sobic.006G155500 expressed protein -
4 Sobic.002G331800 PPR repeat containing protein, expressed -
5 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
6 Sobic.004G055000 peptidase, cysteine peptidase active site, putative, expressed -
7 Sobic.001G175700 expressed protein -
8 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
9 Sobic.006G050400 expressed protein -
10 Sobic.004G333400 COBW domain containing protein, putative, expressed -
11 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
12 Sobic.003G275200 methyltransferase domain containing protein, expressed -
13 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
14 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
15 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
16 Sobic.003G334100 zinc finger family protein, putative, expressed -
17 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
19 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.006G132000 glycine-rich protein, putative, expressed -


Gene co-expression network
sample Sobic010G056300 Sobic010G056300 Sobic001G535700 Sobic001G535700 Sobic010G056300--Sobic001G535700 Sobic001G118400 Sobic001G118400 Sobic010G056300--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic010G056300--Sobic006G155500 Sobic002G331800 Sobic002G331800 Sobic010G056300--Sobic002G331800 Sobic010G183400 Sobic010G183400 Sobic010G056300--Sobic010G183400 Sobic004G055000 Sobic004G055000 Sobic010G056300--Sobic004G055000 Sobic001G175700 Sobic001G175700 Sobic010G056300--Sobic001G175700 Sobic003G253300 Sobic003G253300 Sobic010G056300--Sobic003G253300 Sobic006G050400 Sobic006G050400 Sobic010G056300--Sobic006G050400 Sobic001G535700--Sobic010G056300 Sobic010G208800 Sobic010G208800 Sobic001G535700--Sobic010G208800 Sobic001G128600 Sobic001G128600 Sobic001G535700--Sobic001G128600 Sobic001G283700 Sobic001G283700 Sobic001G535700--Sobic001G283700 Sobic010G201600 Sobic010G201600 Sobic001G535700--Sobic010G201600 Sobic001G535700--Sobic002G331800 Sobic001G535700--Sobic001G118400 Sobic003G342200 Sobic003G342200 Sobic001G535700--Sobic003G342200 Sobic004G165900 Sobic004G165900 Sobic001G535700--Sobic004G165900 Sobic001G118400--Sobic006G155500 Sobic003G070900 Sobic003G070900 Sobic001G118400--Sobic003G070900 Sobic003G328100 Sobic003G328100 Sobic001G118400--Sobic003G328100 Sobic001G118400--Sobic004G165900 Sobic001G286600 Sobic001G286600 Sobic001G118400--Sobic001G286600 Sobic002G061900 Sobic002G061900 Sobic001G118400--Sobic002G061900 Sobic001G118400--Sobic010G056300 Sobic004G252500 Sobic004G252500 Sobic001G118400--Sobic004G252500 Sobic006G140700 Sobic006G140700 Sobic001G118400--Sobic006G140700 Sobic006G155500--Sobic001G118400 Sobic006G155500--Sobic006G050400 Sobic006G155500--Sobic003G328100 Sobic006G155500--Sobic003G253300 Sobic006G155500--Sobic001G286600 Sobic006G110900 Sobic006G110900 Sobic006G155500--Sobic006G110900 Sobic006G155500--Sobic002G061900 Sobic006G155500--Sobic003G070900 Sobic006G097500 Sobic006G097500 Sobic006G155500--Sobic006G097500 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic006G214700 Sobic006G214700 Sobic002G331800--Sobic006G214700 Sobic003G439600 Sobic003G439600 Sobic002G331800--Sobic003G439600 Sobic004G333400 Sobic004G333400 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic003G245800 Sobic003G245800 Sobic002G331800--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic010G183400--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic005G028900 Sobic005G028900 Sobic010G183400--Sobic005G028900 Sobic003G275200 Sobic003G275200 Sobic004G055000--Sobic003G275200 Sobic004G154800 Sobic004G154800 Sobic004G055000--Sobic004G154800 Sobic008G172700 Sobic008G172700 Sobic004G055000--Sobic008G172700 Sobic002G267900 Sobic002G267900 Sobic004G055000--Sobic002G267900 Sobic009G131800 Sobic009G131800 Sobic004G055000--Sobic009G131800 Sobic004G326500 Sobic004G326500 Sobic004G055000--Sobic004G326500 Sobic002G351600 Sobic002G351600 Sobic004G055000--Sobic002G351600 Sobic006G108200 Sobic006G108200 Sobic004G055000--Sobic006G108200 Sobic002G272100 Sobic002G272100 Sobic004G055000--Sobic002G272100 Sobic001G175700--Sobic006G050400 Sobic001G175700--Sobic009G131800 Sobic004G012900 Sobic004G012900 Sobic001G175700--Sobic004G012900 Sobic001G405700 Sobic001G405700 Sobic001G175700--Sobic001G405700 Sobic002G233700 Sobic002G233700 Sobic001G175700--Sobic002G233700 Sobic001G175700--Sobic003G342200 Sobic001G083100 Sobic001G083100 Sobic001G175700--Sobic001G083100 Sobic004G253400 Sobic004G253400 Sobic001G175700--Sobic004G253400 Sobic001G175700--Sobic006G155500 Sobic003G253300--Sobic003G342200 Sobic003G253300--Sobic006G110900 Sobic003G253300--Sobic006G155500 Sobic003G253300--Sobic006G050400 Sobic003G253300--Sobic006G214700 Sobic003G284800 Sobic003G284800 Sobic003G253300--Sobic003G284800 Sobic008G063200 Sobic008G063200 Sobic003G253300--Sobic008G063200 Sobic003G253300--Sobic001G118400 Sobic003G253300--Sobic010G076800 Sobic006G050400--Sobic003G342200 Sobic006G050400--Sobic006G155500 Sobic006G050400--Sobic001G175700 Sobic002G112400 Sobic002G112400 Sobic006G050400--Sobic002G112400 Sobic006G050400--Sobic003G253300 Sobic001G005200 Sobic001G005200 Sobic006G050400--Sobic001G005200 Sobic009G059300 Sobic009G059300 Sobic006G050400--Sobic009G059300 Sobic002G102200 Sobic002G102200 Sobic006G050400--Sobic002G102200 Sobic001G122300 Sobic001G122300 Sobic006G050400--Sobic001G122300
Octagon: transcription factors


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