Gene annotation
Transcriptome id Sobic.003G245800.1
Synonym Sb03g030210
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phosphoglycerate mutase, putative, expressed
UniProt C5XFW4
Pfam PF00300
Panther DB PTHR23029 PTHR23029:SF45
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62840 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os01g47190.1 : phosphoglycerate mutase, putative, expressed
MaizeGDB (Corn) Zm00025a038718
Brachypodium KQK09039
Barley HORVU3Hr1G059610.8 , HORVU3Hr1G059610.9 , HORVU3Hr1G059610.2 , HORVU3Hr1G059610.3 , HORVU3Hr1G059610.1 , HORVU3Hr1G059610.6 , HORVU3Hr1G059610.7 , HORVU3Hr1G059610.4 , HORVU3Hr1G059610.5
Wheat TraesCS3D02G240000 , TraesCS3A02G239700
Populus -


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cDNA sequences
Sobic.003G245800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
2 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
4 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
5 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
6 Sobic.002G250100 dehydrogenase, putative, expressed -
7 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
8 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
9 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
10 Sobic.002G331800 PPR repeat containing protein, expressed -
11 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
12 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
13 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
14 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G388400 expressed protein -
16 Sobic.006G214700 APO, putative, expressed -
17 Sobic.004G179200 expressed protein -
18 Sobic.002G163700 expressed protein -
19 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain


Gene co-expression network
sample Sobic003G245800 Sobic003G245800 Sobic006G197700 Sobic006G197700 Sobic003G245800--Sobic006G197700 Sobic002G345200 Sobic002G345200 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic003G245800--Sobic010G183400 Sobic003G439600 Sobic003G439600 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G221700 Sobic003G221700 Sobic003G245800--Sobic003G221700 Sobic009G234200 Sobic009G234200 Sobic003G245800--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic003G245800--Sobic003G330100 Sobic006G197700--Sobic003G245800 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic006G197700--Sobic003G221700 Sobic002G386400 Sobic002G386400 Sobic006G197700--Sobic002G386400 Sobic002G163700 Sobic002G163700 Sobic006G197700--Sobic002G163700 Sobic002G345200--Sobic003G245800 Sobic002G345200--Sobic006G197700 Sobic002G345200--Sobic003G330100 Sobic002G345200--Sobic004G250200 Sobic002G345200--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic002G345200--Sobic008G072300 Sobic002G345200--Sobic006G111600 Sobic002G345200--Sobic002G250100 Sobic010G028000 Sobic010G028000 Sobic002G345200--Sobic010G028000 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic004G250200--Sobic006G111600 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic001G450600 Sobic001G450600 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic002G331800 Sobic002G331800 Sobic003G439600--Sobic002G331800 Sobic006G214700 Sobic006G214700 Sobic003G439600--Sobic006G214700 Sobic003G439600--Sobic005G028900 Sobic003G439600--Sobic002G163700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic002G250100--Sobic003G245800 Sobic001G388400 Sobic001G388400 Sobic002G250100--Sobic001G388400 Sobic002G250100--Sobic002G163700 Sobic002G250100--Sobic010G028000 Sobic002G250100--Sobic009G234200 Sobic002G250100--Sobic002G345200 Sobic007G227600 Sobic007G227600 Sobic002G250100--Sobic007G227600 Sobic002G250100--Sobic003G439600 Sobic002G250100--Sobic006G197700 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic006G204100 Sobic006G204100 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic009G234200--Sobic004G179200 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200
Octagon: transcription factors


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