Gene annotation
Transcriptome id Sobic.002G163700.2
Synonym Sb02g020770, CRR3
Functional annotation expressed protein
UniProt A0A1W0W4F1
Pfam -
Panther DB PTHR36340
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01590 : chlororespiratory reduction 3
RAP-DB (Rice) LOC_Os09g13600.2 : expressed protein
MaizeGDB (Corn) Zm00025a046384
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G163700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
2 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
3 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
4 Sobic.006G214700 APO, putative, expressed -
5 Sobic.002G250100 dehydrogenase, putative, expressed -
6 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
7 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
8 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
10 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
11 Sobic.001G388400 expressed protein -
12 Sobic.009G004800 - -
13 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
14 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
15 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
16 Sobic.008G063200 expressed protein -
17 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
19 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
20 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic002G163700 Sobic002G163700 Sobic003G439600 Sobic003G439600 Sobic002G163700--Sobic003G439600 Sobic001G450600 Sobic001G450600 Sobic002G163700--Sobic001G450600 Sobic007G227600 Sobic007G227600 Sobic002G163700--Sobic007G227600 Sobic006G214700 Sobic006G214700 Sobic002G163700--Sobic006G214700 Sobic002G250100 Sobic002G250100 Sobic002G163700--Sobic002G250100 Sobic006G197700 Sobic006G197700 Sobic002G163700--Sobic006G197700 Sobic002G386400 Sobic002G386400 Sobic002G163700--Sobic002G386400 Sobic002G038300 Sobic002G038300 Sobic002G163700--Sobic002G038300 Sobic003G245800 Sobic003G245800 Sobic002G163700--Sobic003G245800 Sobic003G439600--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic003G439600--Sobic010G183400 Sobic002G331800 Sobic002G331800 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic003G439600--Sobic005G028900 Sobic003G439600--Sobic002G163700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic001G450600--Sobic006G214700 Sobic004G333400 Sobic004G333400 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic010G074100 Sobic010G074100 Sobic007G227600--Sobic010G074100 Sobic009G036300 Sobic009G036300 Sobic007G227600--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic007G227600--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic007G227600--Sobic009G234200 Sobic010G028000 Sobic010G028000 Sobic007G227600--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic010G211500 Sobic010G211500 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic002G250100--Sobic003G245800 Sobic002G250100--Sobic001G388400 Sobic002G250100--Sobic002G163700 Sobic002G250100--Sobic010G028000 Sobic002G250100--Sobic009G234200 Sobic002G345200 Sobic002G345200 Sobic002G250100--Sobic002G345200 Sobic002G250100--Sobic007G227600 Sobic002G250100--Sobic003G439600 Sobic002G250100--Sobic006G197700 Sobic006G197700--Sobic003G245800 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic006G197700--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic006G197700--Sobic002G386400 Sobic006G197700--Sobic002G163700 Sobic002G386400--Sobic002G038300 Sobic003G208300 Sobic003G208300 Sobic002G386400--Sobic003G208300 Sobic002G386400--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic002G386400--Sobic001G161300 Sobic002G386400--Sobic002G163700 Sobic002G386400--Sobic003G330100 Sobic002G386400--Sobic010G028000 Sobic002G386400--Sobic009G234200 Sobic002G386400--Sobic001G388400 Sobic002G038300--Sobic002G386400 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic002G038300--Sobic003G208300 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic004G250200 Sobic004G250200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.