Gene annotation
Transcriptome id Sobic.009G004800.2
Synonym
Functional annotation -
UniProt C5YY15
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G004800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G163700 expressed protein -
2 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
3 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
4 Sobic.001G388400 expressed protein -
5 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
7 Sobic.009G046800 TOC159, putative, expressed -
8 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
9 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
10 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
11 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
12 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
13 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
14 Sobic.008G063200 expressed protein -
15 Sobic.010G074200 - -
16 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
17 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
19 Sobic.002G404200 F-box domain containing protein, expressed -
20 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G004800 Sobic009G004800 Sobic002G163700 Sobic002G163700 Sobic009G004800--Sobic002G163700 Sobic009G036300 Sobic009G036300 Sobic009G004800--Sobic009G036300 Sobic003G330100 Sobic003G330100 Sobic009G004800--Sobic003G330100 Sobic001G388400 Sobic001G388400 Sobic009G004800--Sobic001G388400 Sobic003G310100 Sobic003G310100 Sobic009G004800--Sobic003G310100 Sobic010G028000 Sobic010G028000 Sobic009G004800--Sobic010G028000 Sobic009G046800 Sobic009G046800 Sobic009G004800--Sobic009G046800 Sobic009G234200 Sobic009G234200 Sobic009G004800--Sobic009G234200 Sobic001G450600 Sobic001G450600 Sobic009G004800--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic007G227600 Sobic007G227600 Sobic002G163700--Sobic007G227600 Sobic006G214700 Sobic006G214700 Sobic002G163700--Sobic006G214700 Sobic002G250100 Sobic002G250100 Sobic002G163700--Sobic002G250100 Sobic006G197700 Sobic006G197700 Sobic002G163700--Sobic006G197700 Sobic002G386400 Sobic002G386400 Sobic002G163700--Sobic002G386400 Sobic002G038300 Sobic002G038300 Sobic002G163700--Sobic002G038300 Sobic003G245800 Sobic003G245800 Sobic002G163700--Sobic003G245800 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic010G074200 Sobic010G074200 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic009G036300--Sobic006G204100 Sobic009G036300--Sobic002G163700 Sobic006G111600 Sobic006G111600 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic009G253000 Sobic009G253000 Sobic001G388400--Sobic009G253000 Sobic009G233800 Sobic009G233800 Sobic001G388400--Sobic009G233800 Sobic001G388400--Sobic002G250100 Sobic001G424300 Sobic001G424300 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic001G437200 Sobic001G437200 Sobic003G310100--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic003G310100--Sobic006G111600 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic010G028000--Sobic003G245800 Sobic010G028000--Sobic010G183400 Sobic010G086900 Sobic010G086900 Sobic009G046800--Sobic010G086900 Sobic009G046800--Sobic009G004800 Sobic001G161400 Sobic001G161400 Sobic009G046800--Sobic001G161400 Sobic003G039300 Sobic003G039300 Sobic009G046800--Sobic003G039300 Sobic004G003900 Sobic004G003900 Sobic009G046800--Sobic004G003900 Sobic004G263200 Sobic004G263200 Sobic009G046800--Sobic004G263200 Sobic009G046800--Sobic006G237100 Sobic003G283800 Sobic003G283800 Sobic009G046800--Sobic003G283800 Sobic002G140000 Sobic002G140000 Sobic009G046800--Sobic002G140000 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic001G450600--Sobic006G214700 Sobic004G333400 Sobic004G333400 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200
Octagon: transcription factors


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