Gene annotation
Transcriptome id Sobic.003G208300.1
Synonym emb1796, Sb03g026930
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XQ70
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF237
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49240 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g24570.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053797 , Zm00025a028614
Brachypodium KQK08575
Barley HORVU3Hr1G052300.1 , HORVU3Hr1G052280.1 , HORVU3Hr1G052280.2
Wheat TraesCS2B02G076200 , TraesCS3B02G244700 , TraesCS2A02G063500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
2 Sobic.007G132500 F-box domain containing protein, expressed -
3 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G163700 expressed protein -
5 Sobic.009G004800 - -
6 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
7 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
8 Sobic.006G214700 APO, putative, expressed -
9 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
10 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
11 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
12 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
13 Sobic.008G063200 expressed protein -
14 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
15 Sobic.002G142066 - K18045: SIW14, tyrosine-protein phosphatase SIW14
16 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
17 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
18 Sobic.010G189200 pentatricopeptide, putative, expressed -
19 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
20 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase


Gene co-expression network
sample Sobic003G208300 Sobic003G208300 Sobic002G386400 Sobic002G386400 Sobic003G208300--Sobic002G386400 Sobic007G132500 Sobic007G132500 Sobic003G208300--Sobic007G132500 Sobic002G038300 Sobic002G038300 Sobic003G208300--Sobic002G038300 Sobic002G163700 Sobic002G163700 Sobic003G208300--Sobic002G163700 Sobic009G004800 Sobic009G004800 Sobic003G208300--Sobic009G004800 Sobic006G197700 Sobic006G197700 Sobic003G208300--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic003G208300--Sobic001G161300 Sobic006G214700 Sobic006G214700 Sobic003G208300--Sobic006G214700 Sobic003G330100 Sobic003G330100 Sobic003G208300--Sobic003G330100 Sobic002G386400--Sobic002G038300 Sobic002G386400--Sobic003G208300 Sobic002G386400--Sobic006G197700 Sobic002G386400--Sobic001G161300 Sobic002G386400--Sobic002G163700 Sobic002G386400--Sobic003G330100 Sobic010G028000 Sobic010G028000 Sobic002G386400--Sobic010G028000 Sobic009G234200 Sobic009G234200 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400 Sobic007G132500--Sobic006G197700 Sobic005G021600 Sobic005G021600 Sobic007G132500--Sobic005G021600 Sobic006G111600 Sobic006G111600 Sobic007G132500--Sobic006G111600 Sobic007G132500--Sobic003G208300 Sobic008G063100 Sobic008G063100 Sobic007G132500--Sobic008G063100 Sobic001G006000 Sobic001G006000 Sobic007G132500--Sobic001G006000 Sobic009G028400 Sobic009G028400 Sobic007G132500--Sobic009G028400 Sobic006G110900 Sobic006G110900 Sobic007G132500--Sobic006G110900 Sobic008G063200 Sobic008G063200 Sobic007G132500--Sobic008G063200 Sobic002G038300--Sobic002G386400 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic003G439600 Sobic003G439600 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic007G227600 Sobic007G227600 Sobic002G163700--Sobic007G227600 Sobic002G163700--Sobic006G214700 Sobic002G250100 Sobic002G250100 Sobic002G163700--Sobic002G250100 Sobic002G163700--Sobic006G197700 Sobic002G163700--Sobic002G386400 Sobic002G163700--Sobic002G038300 Sobic003G245800 Sobic003G245800 Sobic002G163700--Sobic003G245800 Sobic009G004800--Sobic002G163700 Sobic009G036300 Sobic009G036300 Sobic009G004800--Sobic009G036300 Sobic009G004800--Sobic003G330100 Sobic009G004800--Sobic001G388400 Sobic003G310100 Sobic003G310100 Sobic009G004800--Sobic003G310100 Sobic009G004800--Sobic010G028000 Sobic009G046800 Sobic009G046800 Sobic009G004800--Sobic009G046800 Sobic009G004800--Sobic009G234200 Sobic009G004800--Sobic001G450600 Sobic006G197700--Sobic003G245800 Sobic002G345200 Sobic002G345200 Sobic006G197700--Sobic002G345200 Sobic006G197700--Sobic006G111600 Sobic006G197700--Sobic007G132500 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic006G197700--Sobic002G386400 Sobic006G197700--Sobic002G163700 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic004G068700 Sobic004G068700 Sobic001G161300--Sobic004G068700 Sobic001G276100 Sobic001G276100 Sobic001G161300--Sobic001G276100 Sobic002G226100 Sobic002G226100 Sobic001G161300--Sobic002G226100 Sobic002G384400 Sobic002G384400 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic004G333400 Sobic004G333400 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200
Octagon: transcription factors


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