Gene annotation
Transcriptome id Sobic.001G450600.1
Synonym PGA2, APG2, UNE3, Sb01g042360, TATC
Functional annotation uncharacterized protein sll0194, putative, expressed
UniProt C5WSM0
Pfam PF00902
Panther DB PTHR30371 PTHR30371:SF3
NCBI CDD -
KEGG Orthology K03118; sec-independent protein translocase protein TatC
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G01110 : Sec-independent periplasmic protein translocase
RAP-DB (Rice) LOC_Os01g31680.1 : uncharacterized protein sll0194, putative, expressed
MaizeGDB (Corn) Zm00025a001386 , Zm00025a053022
Brachypodium KQK04464
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G450600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214700 APO, putative, expressed -
2 Sobic.004G333400 COBW domain containing protein, putative, expressed -
3 Sobic.008G063200 expressed protein -
4 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
5 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
6 Sobic.002G331800 PPR repeat containing protein, expressed -
7 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
8 Sobic.003G334100 zinc finger family protein, putative, expressed -
9 Sobic.010G189200 pentatricopeptide, putative, expressed -
10 Sobic.002G163700 expressed protein -
11 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
12 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
13 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
14 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
15 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
16 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
17 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
18 Sobic.004G248400 APO, putative, expressed -
19 Sobic.004G298900 OR, putative, expressed -
20 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G450600 Sobic001G450600 Sobic006G214700 Sobic006G214700 Sobic001G450600--Sobic006G214700 Sobic004G333400 Sobic004G333400 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic010G183400 Sobic010G183400 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic003G179400 Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic009G234200 Sobic009G234200 Sobic010G183400--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic003G245800 Sobic003G245800 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic003G084500--Sobic004G333400 Sobic003G084500--Sobic003G334100 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic002G331800--Sobic010G076800 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic003G286300--Sobic001G450600 Sobic003G286300--Sobic003G084500 Sobic003G286300--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G286300--Sobic003G221700 Sobic003G286300--Sobic003G444500 Sobic004G179200 Sobic004G179200 Sobic003G286300--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic003G286300--Sobic002G297400 Sobic003G286300--Sobic003G439600 Sobic003G286300--Sobic003G330100 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G334100--Sobic003G084500 Sobic003G334100--Sobic001G450600 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic003G334100--Sobic009G234200 Sobic010G189200--Sobic001G450600 Sobic010G189200--Sobic008G063200 Sobic004G298900 Sobic004G298900 Sobic010G189200--Sobic004G298900 Sobic006G258700 Sobic006G258700 Sobic010G189200--Sobic006G258700 Sobic010G189200--Sobic006G214700 Sobic004G183800 Sobic004G183800 Sobic010G189200--Sobic004G183800 Sobic003G014300 Sobic003G014300 Sobic010G189200--Sobic003G014300 Sobic010G189200--Sobic004G333400 Sobic010G189200--Sobic002G102200
Octagon: transcription factors


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