Gene annotation
Transcriptome id Sobic.004G248400.4,Sobic.004G248400.3,Sobic.004G248400.2
Synonym Sb04g028820, APO2, emb1629
Functional annotation APO, putative, expressed
UniProt A0A1Z5RP50 , A0A194YRF5
Pfam PF05634
Panther DB PTHR10388 PTHR10388:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G57930 : Arabidopsis thaliana protein of unknown function (DUF794)
RAP-DB (Rice) LOC_Os02g50010.1 : APO, putative, expressed
MaizeGDB (Corn) Zm00025a032661
Brachypodium KQK01588 , PNT69516
Barley HORVU6Hr1G073590.6
Wheat TraesCS6B02G325200 , TraesCS6B02G325200 , TraesCS6A02G295100 , TraesCS6A02G295100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214700 APO, putative, expressed -
2 Sobic.004G333400 COBW domain containing protein, putative, expressed -
3 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
4 Sobic.002G168300 RGH2B, putative, expressed -
5 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
6 Sobic.003G334100 zinc finger family protein, putative, expressed -
7 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
8 Sobic.008G063200 expressed protein -
9 Sobic.010G110332 - -
10 Sobic.002G000600 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
11 Sobic.001G028100 - -
12 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
13 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
14 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
15 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
16 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
17 Sobic.010G189200 pentatricopeptide, putative, expressed -
18 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
19 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
20 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic004G248400 Sobic004G248400 Sobic006G214700 Sobic006G214700 Sobic004G248400--Sobic006G214700 Sobic004G333400 Sobic004G333400 Sobic004G248400--Sobic004G333400 Sobic009G052700 Sobic009G052700 Sobic004G248400--Sobic009G052700 Sobic002G168300 Sobic002G168300 Sobic004G248400--Sobic002G168300 Sobic001G450600 Sobic001G450600 Sobic004G248400--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic004G248400--Sobic003G334100 Sobic003G179400 Sobic003G179400 Sobic004G248400--Sobic003G179400 Sobic008G063200 Sobic008G063200 Sobic004G248400--Sobic008G063200 Sobic010G110332 Sobic010G110332 Sobic004G248400--Sobic010G110332 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic003G253300 Sobic003G253300 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic009G052700--Sobic003G334100 Sobic009G052700--Sobic006G214700 Sobic009G052700--Sobic004G248400 Sobic010G211500 Sobic010G211500 Sobic009G052700--Sobic010G211500 Sobic009G052700--Sobic005G028900 Sobic009G052700--Sobic003G179400 Sobic005G138600 Sobic005G138600 Sobic009G052700--Sobic005G138600 Sobic009G014100 Sobic009G014100 Sobic009G052700--Sobic009G014100 Sobic009G052700--Sobic004G333400 Sobic002G168300--Sobic004G248400 Sobic008G172300 Sobic008G172300 Sobic002G168300--Sobic008G172300 Sobic003G381200 Sobic003G381200 Sobic002G168300--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G168300--Sobic004G026500 Sobic001G102500 Sobic001G102500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic002G168300--Sobic009G014100 Sobic002G168300--Sobic004G333400 Sobic001G219700 Sobic001G219700 Sobic002G168300--Sobic001G219700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G334100--Sobic003G084500 Sobic003G334100--Sobic001G450600 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic003G179400--Sobic005G028900 Sobic003G179400--Sobic010G076800 Sobic003G179400--Sobic004G333400 Sobic003G179400--Sobic001G450600 Sobic003G179400--Sobic008G063200 Sobic003G179400--Sobic002G331800 Sobic003G179400--Sobic006G110900 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic008G063200--Sobic010G076800 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic010G110400 Sobic010G110400 Sobic010G110332--Sobic010G110400 Sobic001G060500 Sobic001G060500 Sobic010G110332--Sobic001G060500 Sobic010G110332--Sobic004G248400 Sobic010G110332--Sobic009G052700 Sobic002G418600 Sobic002G418600 Sobic010G110332--Sobic002G418600 Sobic006G233700 Sobic006G233700 Sobic010G110332--Sobic006G233700 Sobic003G125900 Sobic003G125900 Sobic010G110332--Sobic003G125900 Sobic010G110332--Sobic002G181000 Sobic010G110332--Sobic003G334100
Octagon: transcription factors


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