Gene annotation
Transcriptome id Sobic.002G168300.3,Sobic.002G168300.2,Sobic.002G168300.1
Synonym Sb02g021226
Functional annotation RGH2B, putative, expressed
UniProt C5X9Q6
Pfam PF02365 PF03106 PF00931
Panther DB PTHR23155 PTHR23155:SF641
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G46730 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g45750.1,LOC_Os11g45750.2 : WRKY125, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS4D02G002400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G248400 APO, putative, expressed -
2 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
3 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
4 Sobic.004G026500 expressed protein -
5 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
6 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
7 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
8 Sobic.004G333400 COBW domain containing protein, putative, expressed -
9 Sobic.001G219700 pentatricopeptide, putative, expressed -
10 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
11 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
12 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
13 Sobic.001G028100 - -
14 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
15 Sobic.001G124100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
16 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
17 Sobic.002G168500 NBS-LRR type disease resistance protein, putative, expressed -
18 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
19 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
20 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase


Gene co-expression network
sample Sobic002G168300 Sobic002G168300 Sobic004G248400 Sobic004G248400 Sobic002G168300--Sobic004G248400 Sobic008G172300 Sobic008G172300 Sobic002G168300--Sobic008G172300 Sobic003G381200 Sobic003G381200 Sobic002G168300--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G168300--Sobic004G026500 Sobic001G102500 Sobic001G102500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic009G014100 Sobic009G014100 Sobic002G168300--Sobic009G014100 Sobic004G333400 Sobic004G333400 Sobic002G168300--Sobic004G333400 Sobic001G219700 Sobic001G219700 Sobic002G168300--Sobic001G219700 Sobic006G214700 Sobic006G214700 Sobic004G248400--Sobic006G214700 Sobic004G248400--Sobic004G333400 Sobic009G052700 Sobic009G052700 Sobic004G248400--Sobic009G052700 Sobic004G248400--Sobic002G168300 Sobic001G450600 Sobic001G450600 Sobic004G248400--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic004G248400--Sobic003G334100 Sobic003G179400 Sobic003G179400 Sobic004G248400--Sobic003G179400 Sobic008G063200 Sobic008G063200 Sobic004G248400--Sobic008G063200 Sobic010G110332 Sobic010G110332 Sobic004G248400--Sobic010G110332 Sobic008G172300--Sobic004G026500 Sobic008G172300--Sobic009G014100 Sobic003G340600 Sobic003G340600 Sobic008G172300--Sobic003G340600 Sobic002G345700 Sobic002G345700 Sobic008G172300--Sobic002G345700 Sobic001G124100 Sobic001G124100 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic005G142800 Sobic005G142800 Sobic008G172300--Sobic005G142800 Sobic008G172300--Sobic002G168300 Sobic002G167500 Sobic002G167500 Sobic008G172300--Sobic002G167500 Sobic001G090500 Sobic001G090500 Sobic003G381200--Sobic001G090500 Sobic001G159400 Sobic001G159400 Sobic003G381200--Sobic001G159400 Sobic002G276100 Sobic002G276100 Sobic003G381200--Sobic002G276100 Sobic003G381200--Sobic002G168300 Sobic003G381200--Sobic001G102500 Sobic007G065100 Sobic007G065100 Sobic003G381200--Sobic007G065100 Sobic003G381200--Sobic008G172300 Sobic003G138500 Sobic003G138500 Sobic003G381200--Sobic003G138500 Sobic003G381200--Sobic004G026500 Sobic004G026500--Sobic008G172300 Sobic004G026500--Sobic001G124100 Sobic009G193500 Sobic009G193500 Sobic004G026500--Sobic009G193500 Sobic004G026500--Sobic001G219700 Sobic001G072700 Sobic001G072700 Sobic004G026500--Sobic001G072700 Sobic002G339300 Sobic002G339300 Sobic004G026500--Sobic002G339300 Sobic003G203300 Sobic003G203300 Sobic004G026500--Sobic003G203300 Sobic007G227700 Sobic007G227700 Sobic004G026500--Sobic007G227700 Sobic004G026500--Sobic002G276100 Sobic003G067100 Sobic003G067100 Sobic001G102500--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic001G102500--Sobic005G014700 Sobic010G255100 Sobic010G255100 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic001G102500--Sobic002G168300 Sobic003G434700 Sobic003G434700 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic004G238900 Sobic004G238900 Sobic001G102500--Sobic004G238900 Sobic004G238200 Sobic004G238200 Sobic007G023200--Sobic004G238200 Sobic003G217700 Sobic003G217700 Sobic007G023200--Sobic003G217700 Sobic004G163800 Sobic004G163800 Sobic007G023200--Sobic004G163800 Sobic003G234900 Sobic003G234900 Sobic007G023200--Sobic003G234900 Sobic007G023200--Sobic002G168300 Sobic005G059800 Sobic005G059800 Sobic007G023200--Sobic005G059800 Sobic007G185700 Sobic007G185700 Sobic007G023200--Sobic007G185700 Sobic008G062400 Sobic008G062400 Sobic007G023200--Sobic008G062400 Sobic010G176550 Sobic010G176550 Sobic007G023200--Sobic010G176550 Sobic009G014100--Sobic010G197000 Sobic009G014100--Sobic008G172300 Sobic002G073200 Sobic002G073200 Sobic009G014100--Sobic002G073200 Sobic003G108900 Sobic003G108900 Sobic009G014100--Sobic003G108900 Sobic009G014100--Sobic004G026500 Sobic002G354600 Sobic002G354600 Sobic009G014100--Sobic002G354600 Sobic009G014100--Sobic004G333400 Sobic003G190000 Sobic003G190000 Sobic009G014100--Sobic003G190000 Sobic009G014100--Sobic002G168300 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic006G233700 Sobic006G233700 Sobic001G219700--Sobic006G233700 Sobic001G219700--Sobic004G026500 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic008G081900 Sobic008G081900 Sobic001G219700--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic002G349100 Sobic002G349100 Sobic001G219700--Sobic002G349100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.