Gene annotation
Transcriptome id Sobic.002G418600.1
Synonym Sb02g043040
Functional annotation expressed protein
UniProt A0A1B6QGA5
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF695
NCBI CDD -
KEGG Orthology K15710; E3 ubiquitin-protein ligase SHPRH
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G40770 : zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
RAP-DB (Rice) LOC_Os02g32570.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049165
Brachypodium PNT74566 , PNT74567 , KQK14622 , KQK14623
Barley HORVU2Hr1G017680.6 , HORVU2Hr1G017680.4 , HORVU2Hr1G017680.8 , HORVU2Hr1G017680.9 , HORVU2Hr1G017680.24 , HORVU2Hr1G017680.21 , HORVU2Hr1G017680.20 , HORVU2Hr1G017680.23 , HORVU2Hr1G017680.22 , HORVU2Hr1G017680.28 , HORVU2Hr1G017680.2 , HORVU2Hr1G017680.1 , HORVU2Hr1G017680.7 , HORVU2Hr1G017680.5 , HORVU2Hr1G017680.25 , HORVU2Hr1G017680.27 , HORVU2Hr1G017680.29 , HORVU2Hr1G017680.32 , HORVU2Hr1G017680.33 , HORVU2Hr1G017680.30 , HORVU2Hr1G017680.31 , HORVU2Hr1G017680.34 , HORVU2Hr1G017680.35 , HORVU2Hr1G017680.3 , HORVU2Hr1G017680.26 , HORVU2Hr1G017680.15 , HORVU2Hr1G017680.16 , HORVU2Hr1G017680.17 , HORVU2Hr1G017680.10 , HORVU2Hr1G017680.11 , HORVU2Hr1G017680.12 , HORVU2Hr1G017680.13 , HORVU2Hr1G017680.14 , HORVU2Hr1G017680.18 , HORVU2Hr1G017680.19
Wheat TraesCS2A02G104700 , TraesCS2D02G104400 , TraesCS2B02G121700
Populus PNS90756 , PNS90755


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
2 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
3 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
4 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
5 Sobic.004G333400 COBW domain containing protein, putative, expressed -
6 Sobic.004G165000 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
7 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
8 Sobic.003G334100 zinc finger family protein, putative, expressed -
9 Sobic.009G014100 OsFBX178 - F-box domain containing protein, expressed -
10 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
11 Sobic.010G110400 - -
12 Sobic.001G124100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
13 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G168300 RGH2B, putative, expressed -
15 Sobic.004G026500 expressed protein -
16 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
17 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
18 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
19 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
20 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase


Gene co-expression network
sample Sobic002G418600 Sobic002G418600 Sobic002G181000 Sobic002G181000 Sobic002G418600--Sobic002G181000 Sobic002G073200 Sobic002G073200 Sobic002G418600--Sobic002G073200 Sobic006G233700 Sobic006G233700 Sobic002G418600--Sobic006G233700 Sobic005G142800 Sobic005G142800 Sobic002G418600--Sobic005G142800 Sobic004G333400 Sobic004G333400 Sobic002G418600--Sobic004G333400 Sobic004G165000 Sobic004G165000 Sobic002G418600--Sobic004G165000 Sobic001G500600 Sobic001G500600 Sobic002G418600--Sobic001G500600 Sobic003G334100 Sobic003G334100 Sobic002G418600--Sobic003G334100 Sobic009G014100 Sobic009G014100 Sobic002G418600--Sobic009G014100 Sobic003G232700 Sobic003G232700 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic002G073200--Sobic009G014100 Sobic001G060500 Sobic001G060500 Sobic002G073200--Sobic001G060500 Sobic003G190000 Sobic003G190000 Sobic002G073200--Sobic003G190000 Sobic002G073200--Sobic002G418600 Sobic003G203300 Sobic003G203300 Sobic002G073200--Sobic003G203300 Sobic010G110400 Sobic010G110400 Sobic002G073200--Sobic010G110400 Sobic003G108900 Sobic003G108900 Sobic002G073200--Sobic003G108900 Sobic002G073200--Sobic001G500600 Sobic002G073200--Sobic006G233700 Sobic006G232600 Sobic006G232600 Sobic006G233700--Sobic006G232600 Sobic006G233700--Sobic001G500600 Sobic006G233700--Sobic010G110400 Sobic009G170200 Sobic009G170200 Sobic006G233700--Sobic009G170200 Sobic006G233700--Sobic001G060500 Sobic006G233700--Sobic003G203300 Sobic010G171600 Sobic010G171600 Sobic006G233700--Sobic010G171600 Sobic003G070900 Sobic003G070900 Sobic006G233700--Sobic003G070900 Sobic001G219700 Sobic001G219700 Sobic006G233700--Sobic001G219700 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic004G333400--Sobic003G334100 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic001G450600 Sobic001G450600 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic009G175500 Sobic009G175500 Sobic004G165000--Sobic009G175500 Sobic004G165000--Sobic001G500600 Sobic004G165000--Sobic001G283700 Sobic003G094350 Sobic003G094350 Sobic004G165000--Sobic003G094350 Sobic004G165000--Sobic002G181000 Sobic006G132000 Sobic006G132000 Sobic004G165000--Sobic006G132000 Sobic001G126300 Sobic001G126300 Sobic004G165000--Sobic001G126300 Sobic006G106400 Sobic006G106400 Sobic004G165000--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic004G165000--Sobic002G401800 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic003G334100--Sobic003G084500 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic010G197000 Sobic010G197000 Sobic009G014100--Sobic010G197000 Sobic009G014100--Sobic008G172300 Sobic009G014100--Sobic002G073200 Sobic009G014100--Sobic003G108900 Sobic004G026500 Sobic004G026500 Sobic009G014100--Sobic004G026500 Sobic002G354600 Sobic002G354600 Sobic009G014100--Sobic002G354600 Sobic009G014100--Sobic004G333400 Sobic009G014100--Sobic003G190000 Sobic002G168300 Sobic002G168300 Sobic009G014100--Sobic002G168300
Octagon: transcription factors


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