Gene annotation
Transcriptome id Sobic.004G165000.3,Sobic.004G165000.1
Synonym BASS, Sb04g021640
Functional annotation - (PubMedID : 26976818)
bile acid sodium symporter, putative, expressed
UniProt A0A194YQ47 , A0A194YQ28
Pfam PF01758
Panther DB PTHR18640 PTHR18640:SF9
NCBI CDD KOG4821; Predicted Na+-dependent cotransporter
KEGG Orthology K14347; SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G56160 : Sodium Bile acid symporter family
RAP-DB (Rice) LOC_Os02g32930.1 : bile acid sodium symporter, putative, expressed
MaizeGDB (Corn) Zm00025a044623 , Zm00025a020538
Brachypodium KQJ99717
Barley HORVU3Hr1G030520.18 , HORVU3Hr1G030520.11 , HORVU3Hr1G030520.10 , HORVU3Hr1G030520.13 , HORVU3Hr1G030520.12 , HORVU3Hr1G030520.15 , HORVU3Hr1G030520.14 , HORVU3Hr1G030520.17 , HORVU3Hr1G030520.16 , HORVU4Hr1G050290.2 , HORVU4Hr1G050290.3 , HORVU4Hr1G050290.1 , HORVU4Hr1G050290.4 , HORVU3Hr1G030520.5 , HORVU3Hr1G030520.4 , HORVU3Hr1G030520.7 , HORVU3Hr1G030520.6 , HORVU3Hr1G030520.1 , HORVU3Hr1G030520.3 , HORVU3Hr1G030520.2 , HORVU3Hr1G030520.9 , HORVU3Hr1G030520.8
Wheat TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3A02G150200 , TraesCS3B02G177200 , TraesCS3D02G158100
Populus -


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cDNA sequences
Sobic.004G165000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
3 Sobic.001G283700 acyltransferase, putative, expressed K00630: glycerol-3-phosphate O-acyltransferase
4 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.006G132000 glycine-rich protein, putative, expressed -
7 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
8 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
9 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
10 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
12 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase
13 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
14 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
15 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
16 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.001G277400 expressed protein -
18 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
19 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
20 Sobic.006G197300 expressed protein -


Gene co-expression network
sample Sobic004G165000 Sobic004G165000 Sobic009G175500 Sobic009G175500 Sobic004G165000--Sobic009G175500 Sobic001G500600 Sobic001G500600 Sobic004G165000--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic004G165000--Sobic001G283700 Sobic003G094350 Sobic003G094350 Sobic004G165000--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic004G165000--Sobic002G181000 Sobic006G132000 Sobic006G132000 Sobic004G165000--Sobic006G132000 Sobic001G126300 Sobic001G126300 Sobic004G165000--Sobic001G126300 Sobic006G106400 Sobic006G106400 Sobic004G165000--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic004G165000--Sobic002G401800 Sobic001G005200 Sobic001G005200 Sobic009G175500--Sobic001G005200 Sobic004G336200 Sobic004G336200 Sobic009G175500--Sobic004G336200 Sobic001G128600 Sobic001G128600 Sobic009G175500--Sobic001G128600 Sobic003G160800 Sobic003G160800 Sobic009G175500--Sobic003G160800 Sobic003G387100 Sobic003G387100 Sobic009G175500--Sobic003G387100 Sobic009G175500--Sobic001G500600 Sobic009G175500--Sobic001G283700 Sobic009G175500--Sobic001G126300 Sobic010G035400 Sobic010G035400 Sobic009G175500--Sobic010G035400 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic001G283700--Sobic006G106400 Sobic001G283700--Sobic009G175500 Sobic001G283700--Sobic001G126300 Sobic004G333400 Sobic004G333400 Sobic001G283700--Sobic004G333400 Sobic004G012900 Sobic004G012900 Sobic001G283700--Sobic004G012900 Sobic001G283700--Sobic001G128600 Sobic001G283700--Sobic004G165000 Sobic002G112400 Sobic002G112400 Sobic001G283700--Sobic002G112400 Sobic005G110400 Sobic005G110400 Sobic001G283700--Sobic005G110400 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic006G132000--Sobic002G401800 Sobic003G432500 Sobic003G432500 Sobic006G132000--Sobic003G432500 Sobic006G132000--Sobic004G336200 Sobic002G272100 Sobic002G272100 Sobic006G132000--Sobic002G272100 Sobic006G132000--Sobic005G110400 Sobic006G132000--Sobic006G106400 Sobic006G132000--Sobic004G012900 Sobic006G132000--Sobic003G287900 Sobic008G073100 Sobic008G073100 Sobic006G132000--Sobic008G073100 Sobic001G126300--Sobic005G110400 Sobic001G126300--Sobic008G073100 Sobic001G126300--Sobic001G495200 Sobic001G126300--Sobic003G160800 Sobic001G126300--Sobic009G148500 Sobic001G126300--Sobic003G387100 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic003G301300 Sobic003G301300 Sobic001G126300--Sobic003G301300 Sobic004G011300 Sobic004G011300 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic001G368500 Sobic001G368500 Sobic006G106400--Sobic001G368500 Sobic005G143500 Sobic005G143500 Sobic006G106400--Sobic005G143500 Sobic006G106400--Sobic002G401800 Sobic006G106400--Sobic001G283700 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400
Octagon: transcription factors


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