Gene annotation
Transcriptome id Sobic.001G277400.1
Synonym Sb01g027350
Functional annotation expressed protein
UniProt A0A1B6QLH0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF739
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18520 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g44210.2 : expressed protein
MaizeGDB (Corn) Zm00025a003626
Brachypodium -
Barley HORVU5Hr1G010900.3 , HORVU5Hr1G010900.2 , HORVU5Hr1G010900.1 , HORVU5Hr1G010900.7 , HORVU5Hr1G010900.6 , HORVU5Hr1G010900.5 , HORVU5Hr1G010900.4 , HORVU5Hr1G010900.9 , HORVU5Hr1G010900.8 , HORVU5Hr1G010900.13 , HORVU5Hr1G010900.12 , HORVU5Hr1G010900.11 , HORVU5Hr1G010900.10 , HORVU5Hr1G010900.14
Wheat -
Populus -


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cDNA sequences
Sobic.001G277400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G271900 expressed protein -
2 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
3 Sobic.004G165000 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
4 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
5 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
6 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
7 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
8 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
9 Sobic.004G065300 CR084 protein, putative, expressed -
10 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
11 Sobic.004G179200 expressed protein -
12 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
13 Sobic.004G333400 COBW domain containing protein, putative, expressed -
14 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
15 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
16 Sobic.006G132000 glycine-rich protein, putative, expressed -
17 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
18 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
19 Sobic.003G334100 zinc finger family protein, putative, expressed -
20 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -


Gene co-expression network
sample Sobic001G277400 Sobic001G277400 Sobic003G271900 Sobic003G271900 Sobic001G277400--Sobic003G271900 Sobic002G131700 Sobic002G131700 Sobic001G277400--Sobic002G131700 Sobic004G165000 Sobic004G165000 Sobic001G277400--Sobic004G165000 Sobic010G035200 Sobic010G035200 Sobic001G277400--Sobic010G035200 Sobic003G084500 Sobic003G084500 Sobic001G277400--Sobic003G084500 Sobic002G181000 Sobic002G181000 Sobic001G277400--Sobic002G181000 Sobic005G002900 Sobic005G002900 Sobic001G277400--Sobic005G002900 Sobic003G444500 Sobic003G444500 Sobic001G277400--Sobic003G444500 Sobic004G065300 Sobic004G065300 Sobic001G277400--Sobic004G065300 Sobic001G368500 Sobic001G368500 Sobic003G271900--Sobic001G368500 Sobic003G432500 Sobic003G432500 Sobic003G271900--Sobic003G432500 Sobic002G272100 Sobic002G272100 Sobic003G271900--Sobic002G272100 Sobic005G143500 Sobic005G143500 Sobic003G271900--Sobic005G143500 Sobic003G324700 Sobic003G324700 Sobic003G271900--Sobic003G324700 Sobic006G055800 Sobic006G055800 Sobic003G271900--Sobic006G055800 Sobic008G039600 Sobic008G039600 Sobic003G271900--Sobic008G039600 Sobic005G110400 Sobic005G110400 Sobic003G271900--Sobic005G110400 Sobic006G106400 Sobic006G106400 Sobic003G271900--Sobic006G106400 Sobic004G179200 Sobic004G179200 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic009G175500 Sobic009G175500 Sobic004G165000--Sobic009G175500 Sobic001G500600 Sobic001G500600 Sobic004G165000--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic004G165000--Sobic001G283700 Sobic003G094350 Sobic003G094350 Sobic004G165000--Sobic003G094350 Sobic004G165000--Sobic002G181000 Sobic006G132000 Sobic006G132000 Sobic004G165000--Sobic006G132000 Sobic001G126300 Sobic001G126300 Sobic004G165000--Sobic001G126300 Sobic004G165000--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic004G165000--Sobic002G401800 Sobic010G035200--Sobic001G469933 Sobic010G035200--Sobic003G324700 Sobic010G035200--Sobic007G171800 Sobic010G035200--Sobic002G131700 Sobic010G035200--Sobic001G083100 Sobic001G122400 Sobic001G122400 Sobic010G035200--Sobic001G122400 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic004G164100 Sobic004G164100 Sobic010G035200--Sobic004G164100 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic003G232700 Sobic003G232700 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic005G002900--Sobic009G148500 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic005G002900--Sobic006G106400 Sobic005G002900--Sobic003G432500 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic004G065300--Sobic001G368500 Sobic004G065300--Sobic006G055800 Sobic004G065300--Sobic003G432500 Sobic004G065300--Sobic005G110400 Sobic004G065300--Sobic003G324700 Sobic006G256600 Sobic006G256600 Sobic004G065300--Sobic006G256600 Sobic004G065300--Sobic005G002900 Sobic004G065300--Sobic001G469933 Sobic002G297400 Sobic002G297400 Sobic004G065300--Sobic002G297400
Octagon: transcription factors


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