Gene annotation
| Transcriptome id | Sobic.002G181000.1 |
|---|---|
| Synonym | Sb02g022940 |
| Functional annotation | chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed |
| UniProt | C5XAP2 |
| Pfam | PF01985 |
| Panther DB | PTHR31846 PTHR31846:SF7 |
| NCBI CDD | KOG1990; Poly(A)-specific exoribonuclease PARN |
| KEGG Orthology | - |
| Gene Ontology | GO:0003723; RNA binding |
Orthologs (automatic annotation)
| TAIR | AT4G29750 : CRS1 / YhbY (CRM) domain-containing protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g19850.1 : chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046671 |
| Brachypodium | KQJ89970 |
| Barley | HORVU5Hr1G057460.19 , HORVU5Hr1G057460.18 , HORVU5Hr1G057460.11 , HORVU5Hr1G057460.10 , HORVU5Hr1G057460.13 , HORVU5Hr1G057460.12 , HORVU5Hr1G057460.15 , HORVU5Hr1G057460.14 , HORVU5Hr1G057460.17 , HORVU5Hr1G057460.16 , HORVU5Hr1G057460.9 , HORVU5Hr1G057460.8 , HORVU5Hr1G057460.5 , HORVU5Hr1G057460.4 , HORVU5Hr1G057460.7 , HORVU5Hr1G057460.6 , HORVU5Hr1G057460.1 , HORVU5Hr1G057460.3 , HORVU5Hr1G057460.2 , HORVU5Hr1G057460.20 , HORVU5Hr1G057460.21 , HORVU5Hr1G057460.22 , HORVU5Hr1G057460.23 |
| Wheat | TraesCS5D02G197600 |
| Populus | - |
JBrowse
| Sobic.002G181000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G232700 | peptide deformylase, putative, expressed | K01462: PDF, peptide deformylase |
| 2 | Sobic.001G500600 | pseudouridine synthase family protein, putative, expressed | - |
| 3 | Sobic.002G043600 | prolyl-tRNA synthetase, putative, expressed | K01881: PARS, prolyl-tRNA synthetase |
| 4 | Sobic.004G333400 | COBW domain containing protein, putative, expressed | - |
| 5 | Sobic.001G054100 | spo0B-associated GTP-binding protein, putative, expressed | - |
| 6 | Sobic.008G039600 | signal recognition particle 54 kDa protein, putative, expressed | K03106: SRP54, signal recognition particle subunit SRP54 |
| 7 | Sobic.001G495200 | Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed | K00383: GSR, glutathione reductase (NADPH) |
| 8 | Sobic.003G352500 | ribonuclease protein, putative, expressed | - |
| 9 | Sobic.009G148500 | GTPase of unknown function domain containing protein, putative, expressed | - |
| 10 | Sobic.001G083100 | Unnamed(PubMedID : 24676859)@WRKY4, expressed | - |
| 11 | Sobic.004G011300 | S1 RNA binding domain containing protein, expressed | - |
| 12 | Sobic.003G141100 | O-sialoglycoprotein endopeptidase, putative, expressed | K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase |
| 13 | Sobic.005G143500 | aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed | K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B |
| 14 | Sobic.006G106400 | OsDegp5 - Putative Deg protease homologue, expressed | - |
| 15 | Sobic.003G372900 | deoxynucleoside kinase family, putative, expressed | - |
| 16 | Sobic.010G002000 | glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed | K14164: glycyl-tRNA synthetase |
| 17 | Sobic.005G002900 | OsGrx_S16 - glutaredoxin subgroup II, expressed | - |
| 18 | Sobic.004G165000 | -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed | K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7 |
| 19 | Sobic.003G334100 | zinc finger family protein, putative, expressed | - |
| 20 | Sobic.002G418600 | expressed protein | K15710: E3 ubiquitin-protein ligase SHPRH |
Gene co-expression network
Octagon: transcription factors
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