Gene annotation
Transcriptome id Sobic.008G039600.1
Synonym 54CP, SRP54CP, CPSRP54, Sb08g003410, FFC
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt C5YS38
Pfam PF01656 PF02881 PF02978
Panther DB PTHR11564 PTHR11564:SF19
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT5G03940 : chloroplast signal recognition particle 54 kDa subunit
RAP-DB (Rice) LOC_Os11g05556.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a053908 , Zm00025a033497
Brachypodium KQJ89412 , KQJ89409
Barley HORVU4Hr1G021960.8 , HORVU4Hr1G021960.9 , HORVU4Hr1G021960.1 , HORVU4Hr1G021960.2 , HORVU4Hr1G021960.3 , HORVU4Hr1G021960.4 , HORVU4Hr1G021960.5 , HORVU4Hr1G021960.6 , HORVU4Hr1G021960.7 , HORVU4Hr1G021960.12 , HORVU4Hr1G021960.13 , HORVU4Hr1G021960.10 , HORVU4Hr1G021960.11 , HORVU4Hr1G021960.16 , HORVU4Hr1G021960.14 , HORVU4Hr1G021960.15 , HORVU4Hr1G021950.11 , HORVU4Hr1G021950.10 , HORVU4Hr1G021950.9 , HORVU4Hr1G021950.5 , HORVU4Hr1G021950.4 , HORVU4Hr1G021950.7 , HORVU4Hr1G021950.6 , HORVU4Hr1G021950.8 , HORVU4Hr1G021950.1 , HORVU4Hr1G021950.3 , HORVU4Hr1G021950.2
Wheat TraesCS4A02G197700 , TraesCS4B02G117900 , TraesCS4B02G117900 , TraesCS4B02G117900 , TraesCS4D02G115600 , TraesCS4B02G117800 , TraesCS4A02G197600 , TraesCS4D02G115500
Populus -


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cDNA sequences
Sobic.008G039600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
2 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
3 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
4 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
5 Sobic.002G272100 expressed protein -
6 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
7 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
8 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
9 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
10 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
11 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
12 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
13 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
14 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
16 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.003G271900 expressed protein -
18 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
19 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
20 Sobic.003G324700 expressed protein -


Gene co-expression network
sample Sobic008G039600 Sobic008G039600 Sobic005G143500 Sobic005G143500 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic008G073100 Sobic008G073100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic003G324700 Sobic003G324700 Sobic005G143500--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic001G083100--Sobic005G002900 Sobic009G148500 Sobic009G148500 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G469933 Sobic001G469933 Sobic001G083100--Sobic001G469933 Sobic006G055800 Sobic006G055800 Sobic001G083100--Sobic006G055800 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic001G083100--Sobic008G073100 Sobic004G011300 Sobic004G011300 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic006G106400--Sobic001G368500 Sobic006G106400--Sobic005G143500 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100 Sobic004G336200 Sobic004G336200 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic002G272100--Sobic002G401800 Sobic002G272100--Sobic008G073100 Sobic002G272100--Sobic001G368500 Sobic008G050400 Sobic008G050400 Sobic002G272100--Sobic008G050400 Sobic002G272100--Sobic008G039600 Sobic002G351600 Sobic002G351600 Sobic002G272100--Sobic002G351600 Sobic002G267900 Sobic002G267900 Sobic002G272100--Sobic002G267900 Sobic002G272100--Sobic001G083100 Sobic002G272100--Sobic005G110400 Sobic010G002000--Sobic003G094350 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic001G500600 Sobic001G500600 Sobic010G002000--Sobic001G500600 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic010G002000--Sobic005G143500 Sobic010G002000--Sobic004G336200 Sobic003G141100 Sobic003G141100 Sobic010G002000--Sobic003G141100 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic003G432500 Sobic003G432500 Sobic001G368500--Sobic003G432500 Sobic001G368500--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G368500--Sobic001G122400 Sobic001G368500--Sobic008G073100 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic001G368500--Sobic005G143500 Sobic002G133900 Sobic002G133900 Sobic003G094350--Sobic002G133900 Sobic003G070900 Sobic003G070900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G287900 Sobic003G287900 Sobic003G094350--Sobic003G287900 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic003G232700 Sobic003G232700 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500
Octagon: transcription factors


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