Gene annotation
Transcriptome id Sobic.003G324700.1
Synonym AtCEST, CEST
Functional annotation expressed protein
UniProt A0A1B6Q6K8
Pfam -
Panther DB PTHR33672 PTHR33672:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44650 : -
RAP-DB (Rice) LOC_Os01g58470.1 : expressed protein
MaizeGDB (Corn) Zm00025a027207
Brachypodium -
Barley HORVU3Hr1G078200.1 , HORVU3Hr1G078200.2 , HORVU3Hr1G078200.3
Wheat TraesCS3A02G328300 , TraesCS3A02G328300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G324700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
2 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
3 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
4 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
5 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
6 Sobic.002G152800 RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G386300 expressed protein -
8 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
9 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
10 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
11 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
12 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
13 Sobic.007G090400 expressed protein -
14 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
15 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
16 Sobic.002G198000 CRR6, putative, expressed -
17 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
18 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
19 Sobic.003G271900 expressed protein -
20 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G324700 Sobic003G324700 Sobic001G122400 Sobic001G122400 Sobic003G324700--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic003G324700--Sobic001G368500 Sobic001G469933 Sobic001G469933 Sobic003G324700--Sobic001G469933 Sobic004G335800 Sobic004G335800 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic001G527100 Sobic001G527100 Sobic003G324700--Sobic001G527100 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic001G368500--Sobic003G324700 Sobic005G110400 Sobic005G110400 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G368500--Sobic001G469933 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic005G143500 Sobic005G143500 Sobic001G368500--Sobic005G143500 Sobic001G469933--Sobic001G122400 Sobic001G469933--Sobic001G368500 Sobic001G469933--Sobic003G324700 Sobic003G077400 Sobic003G077400 Sobic001G469933--Sobic003G077400 Sobic001G469933--Sobic006G055800 Sobic001G469933--Sobic003G432500 Sobic001G469933--Sobic004G335800 Sobic001G083100 Sobic001G083100 Sobic001G469933--Sobic001G083100 Sobic001G469933--Sobic005G110400 Sobic001G040000 Sobic001G040000 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic002G152800--Sobic003G324700 Sobic002G152800--Sobic004G335800 Sobic002G152800--Sobic006G055800 Sobic002G152800--Sobic001G469933 Sobic002G152800--Sobic001G368500 Sobic002G152800--Sobic003G432500 Sobic007G090400 Sobic007G090400 Sobic002G152800--Sobic007G090400 Sobic002G214600 Sobic002G214600 Sobic002G152800--Sobic002G214600 Sobic002G152800--Sobic001G122400 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.