Gene annotation
Transcriptome id Sobic.001G527100.1
Synonym PRPL11, Sb01g049050
Functional annotation L11 domain containing ribosomal protein, putative, expressed
UniProt C5X0W2
Pfam PF00298 PF03946
Panther DB PTHR11661 PTHR11661:SF7
NCBI CDD KOG3257; Mitochondrial/chloroplast ribosomal protein L11
KEGG Orthology K02867; RP-L11, MRPL11, large subunit ribosomal protein L11
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G32990 : plastid ribosomal protein l11
RAP-DB (Rice) LOC_Os03g03020.1 : L11 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a000302
Brachypodium KQK23923
Barley HORVU4Hr1G084830.2 , HORVU4Hr1G084830.1
Wheat TraesCS5A02G515700 , TraesCS4B02G347000 , TraesCS4D02G341900
Populus -


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cDNA sequences
Sobic.001G527100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
2 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
3 Sobic.002G198000 CRR6, putative, expressed -
4 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
5 Sobic.003G386300 expressed protein -
6 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
8 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
9 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
10 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
11 Sobic.002G251400 expressed protein -
12 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
13 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
14 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
15 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
16 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
17 Sobic.003G324700 expressed protein -
18 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
19 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
20 Sobic.001G531200 methylthioribose kinase, putative, expressed -


Gene co-expression network
sample Sobic001G527100 Sobic001G527100 Sobic001G240000 Sobic001G240000 Sobic001G527100--Sobic001G240000 Sobic001G122400 Sobic001G122400 Sobic001G527100--Sobic001G122400 Sobic002G198000 Sobic002G198000 Sobic001G527100--Sobic002G198000 Sobic004G335800 Sobic004G335800 Sobic001G527100--Sobic004G335800 Sobic003G386300 Sobic003G386300 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G391400 Sobic001G391400 Sobic001G527100--Sobic001G391400 Sobic001G040000 Sobic001G040000 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic002G198000--Sobic004G164100 Sobic002G198000--Sobic001G527100 Sobic002G198000--Sobic001G122400 Sobic002G198000--Sobic003G386300 Sobic002G198000--Sobic001G240000 Sobic002G198000--Sobic004G335800 Sobic002G198000--Sobic001G469933 Sobic002G198000--Sobic002G251400 Sobic010G095200 Sobic010G095200 Sobic002G198000--Sobic010G095200 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic004G164100--Sobic003G386300 Sobic004G164100--Sobic002G251400 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic004G164100--Sobic010G095200 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G328200--Sobic003G386300
Octagon: transcription factors


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