Gene annotation
| Transcriptome id | Sobic.004G116100.1 |
|---|---|
| Synonym | Sb04g009660 |
| Functional annotation | 50S ribosomal protein L21, chloroplast precursor, putative, expressed |
| UniProt | C5XZH7 |
| Pfam | PF00829 |
| Panther DB | PTHR21349 PTHR21349:SF2 |
| NCBI CDD | KOG1686; Mitochondrial/chloroplast ribosomal L21 protein |
| KEGG Orthology | K02888; RP-L21, MRPL21, large subunit ribosomal protein L21 |
| Gene Ontology | GO:0005840; ribosome |
Orthologs (automatic annotation)
| TAIR | AT1G35680 : Ribosomal protein L21 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g15900.1 : 50S ribosomal protein L21, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034407 , Zm00025a019898 |
| Brachypodium | KQJ94295 |
| Barley | HORVU6Hr1G041020.5 , HORVU6Hr1G041020.4 , HORVU6Hr1G041020.6 , HORVU6Hr1G041020.1 , HORVU6Hr1G041020.3 , HORVU6Hr1G041020.2 |
| Wheat | TraesCS6D02G174500 , TraesCS6A02G191400 , TraesCS6A02G191400 , TraesCS6B02G219700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 2 | Sobic.001G040000 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
| 3 | Sobic.001G391400 | S1 RNA binding domain containing protein, expressed | K02945: RP-S1, small subunit ribosomal protein S1 |
| 4 | Sobic.001G453300 | 50S ribosomal protein L15, chloroplast precursor, putative, expressed | K02876: RP-L15, MRPL15, large subunit ribosomal protein L15 |
| 5 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 6 | Sobic.004G298100 | 50S ribosomal protein L19, chloroplast precursor, putative, expressed | K02884: RP-L19, MRPL19, large subunit ribosomal protein L19 |
| 7 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 8 | Sobic.003G386300 | expressed protein | - |
| 9 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 10 | Sobic.003G014100 | uncharacterized protein family UPF0016 domain containing protein, expressed | - |
| 11 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 12 | Sobic.004G317900 | expressed protein | - |
| 13 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 14 | Sobic.001G240000 | ribosomal protein L28 protein, putative, expressed | K02902: RP-L28, MRPL28, large subunit ribosomal protein L28 |
| 15 | Sobic.003G393800 | 30S ribosomal protein S31, chloroplast precursor, putative, expressed | K19033: PSRP4, 30S ribosomal protein S31 |
| 16 | Sobic.003G295800 | ribosomal protein L13, putative, expressed | K02871: RP-L13, MRPL13, large subunit ribosomal protein L13 |
| 17 | Sobic.003G256200 | ribosomal protein rpS20, putative, expressed | K02968: RP-S20, small subunit ribosomal protein S20 |
| 18 | Sobic.003G246400 | ribosomal protein L7/L12 C-terminal domain containing protein, expressed | K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12 |
| 19 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 20 | Sobic.010G233800 | ribosomal protein L24, putative, expressed | K02895: RP-L24, MRPL24, large subunit ribosomal protein L24 |
Gene co-expression network
Octagon: transcription factors
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