Gene annotation
Transcriptome id Sobic.002G158800.3,Sobic.002G158800.2,Sobic.002G158800.1
Synonym Sb02g020260, FLU
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide repeat containing protein, putative, expressed
UniProt A0A1W0W4C7 , C5X8C8 , A0A1W0W470
Pfam PF13424
Panther DB PTHR10098 PTHR10098:SF117
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14110 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g32730.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046271
Brachypodium KQJ89694 , KQJ89695
Barley HORVU5Hr1G053480.2 , HORVU5Hr1G053480.1
Wheat TraesCS5B02G172900 , TraesCS5B02G172900 , TraesCS5A02G175200 , TraesCS5D02G179900 , TraesCS5D02G179900 , TraesCS5A02G175200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099000 expressed protein -
2 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
3 Sobic.003G324700 expressed protein -
4 Sobic.007G015300 calreticulin family protein, expressed -
5 Sobic.005G110481 - -
6 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
7 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
8 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
9 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
10 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
11 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
12 Sobic.002G013700 PPR2, putative, expressed -
13 Sobic.003G373300 DNA polymerase I, putative, expressed -
14 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
15 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
16 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
17 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
18 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
19 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.003G386300 expressed protein -


Gene co-expression network
sample Sobic002G158800 Sobic002G158800 Sobic001G099000 Sobic001G099000 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic007G015300 Sobic007G015300 Sobic002G158800--Sobic007G015300 Sobic005G110481 Sobic005G110481 Sobic002G158800--Sobic005G110481 Sobic001G122400 Sobic001G122400 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic005G184300 Sobic005G184300 Sobic002G158800--Sobic005G184300 Sobic009G104700 Sobic009G104700 Sobic002G158800--Sobic009G104700 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic010G027200 Sobic010G027200 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic001G040000 Sobic001G040000 Sobic001G391400--Sobic001G040000 Sobic001G527100 Sobic001G527100 Sobic001G391400--Sobic001G527100 Sobic001G391400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic001G391400--Sobic004G335800 Sobic004G116100 Sobic004G116100 Sobic001G391400--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic003G324700--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic003G324700--Sobic001G368500 Sobic001G469933 Sobic001G469933 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic001G375000 Sobic001G375000 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic004G338300--Sobic002G158800 Sobic004G338300--Sobic007G015300 Sobic004G338300--Sobic001G099000 Sobic004G338300--Sobic010G027200 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic004G338300--Sobic009G104700 Sobic004G338300--Sobic010G011200 Sobic004G338300--Sobic002G013700 Sobic005G184300--Sobic001G099000 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic005G184300--Sobic002G081500 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic009G104700--Sobic003G128400 Sobic009G104700--Sobic003G373300
Octagon: transcription factors


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