Gene annotation
Transcriptome id Sobic.005G184300.1
Synonym Sb05g024270, SRS, OVA7, ATSRS
Functional annotation seryl-tRNA synthetase, putative, expressed
UniProt C5Y6B8
Pfam PF02403 PF00587
Panther DB PTHR11778 PTHR11778:SF0
NCBI CDD -
KEGG Orthology K01875; SARS, seryl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006434seryl-tRNA aminoacylation GO:0005737cytoplasm GO:0004828serine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT1G11870 : Seryl-tRNA synthetase
RAP-DB (Rice) LOC_Os11g39670.1 : seryl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a029382
Brachypodium KQJ87855 , KQJ87856
Barley HORVU4Hr1G040550.7 , HORVU4Hr1G040550.4 , HORVU4Hr1G040550.5 , HORVU4Hr1G040550.6 , HORVU4Hr1G040550.1 , HORVU4Hr1G040550.2 , HORVU4Hr1G040550.3
Wheat TraesCS5D02G154200 , TraesCS5B02G136500 , TraesCS5A02G137800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099000 expressed protein -
2 Sobic.007G101300 expressed protein -
3 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
5 Sobic.001G003900 pentatricopeptide, putative, expressed -
6 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
8 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
9 Sobic.005G110481 - -
10 Sobic.007G015300 calreticulin family protein, expressed -
11 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
12 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
13 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.003G045300 cobalt ion transporter, putative, expressed -
15 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
16 Sobic.003G324700 expressed protein -
17 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
18 Sobic.006G256600 expressed protein -
19 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.002G013700 PPR2, putative, expressed -


Gene co-expression network
sample Sobic005G184300 Sobic005G184300 Sobic001G099000 Sobic001G099000 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic003G128400 Sobic003G128400 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G110481 Sobic005G110481 Sobic005G184300--Sobic005G110481 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic010G027200 Sobic010G027200 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic007G101300--Sobic005G184300 Sobic007G101300--Sobic005G110481 Sobic007G101300--Sobic003G128400 Sobic002G013700 Sobic002G013700 Sobic007G101300--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic007G101300--Sobic009G104700 Sobic001G375000 Sobic001G375000 Sobic007G101300--Sobic001G375000 Sobic001G281500 Sobic001G281500 Sobic007G101300--Sobic001G281500 Sobic007G101300--Sobic001G099000 Sobic007G101300--Sobic010G027200 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic002G158800--Sobic005G110481 Sobic001G122400 Sobic001G122400 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic002G158800--Sobic009G104700 Sobic001G003900--Sobic005G184300 Sobic001G003900--Sobic003G045300 Sobic001G003900--Sobic001G099000 Sobic001G003900--Sobic001G375000 Sobic001G382800 Sobic001G382800 Sobic001G003900--Sobic001G382800 Sobic001G003900--Sobic003G128400 Sobic001G003900--Sobic007G015300 Sobic001G003900--Sobic004G003900 Sobic001G003900--Sobic010G027200 Sobic004G179200 Sobic004G179200 Sobic002G297400--Sobic004G179200 Sobic002G297400--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic002G297400--Sobic001G122400 Sobic002G297400--Sobic005G184300 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic002G081500--Sobic001G099000 Sobic002G081500--Sobic001G469933 Sobic002G081500--Sobic005G184300 Sobic002G081500--Sobic006G055800 Sobic002G081500--Sobic002G297400 Sobic005G110400 Sobic005G110400 Sobic002G081500--Sobic005G110400 Sobic004G020800 Sobic004G020800 Sobic002G081500--Sobic004G020800 Sobic001G037500 Sobic001G037500 Sobic002G081500--Sobic001G037500 Sobic002G081500--Sobic002G158800 Sobic003G432500 Sobic003G432500 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400
Octagon: transcription factors


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