Gene annotation
Transcriptome id Sobic.003G128400.1
Synonym Sb03g010870, CLPR4
Functional annotation OsClp1 - Putative Clp protease homologue, expressed
UniProt C5XH66
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF25
NCBI CDD -
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17040 : CLP protease R subunit 4
RAP-DB (Rice) LOC_Os01g16530.1 : OsClp1 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a023993
Brachypodium KQK03862 , KQK03863
Barley HORVU3Hr1G038610.4 , HORVU3Hr1G038610.2 , HORVU3Hr1G038610.1
Wheat TraesCS3B02G216800 , TraesCS3A02G187300 , TraesCS3D02G191100 , TraesCS3D02G191100
Populus -


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cDNA sequences
Sobic.003G128400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.007G101300 expressed protein -
3 Sobic.003G045300 cobalt ion transporter, putative, expressed -
4 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
5 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
6 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
7 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
8 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
10 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
11 Sobic.006G088000 translocon Tic40, putative, expressed -
12 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
13 Sobic.001G003900 pentatricopeptide, putative, expressed -
14 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.008G130900 ribosomal protein S6, putative, expressed -
16 Sobic.007G015300 calreticulin family protein, expressed -
17 Sobic.006G256600 expressed protein -
18 Sobic.001G305700 Mur ligase family protein, putative, expressed -
19 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic003G128400 Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic007G101300--Sobic005G184300 Sobic005G110481 Sobic005G110481 Sobic007G101300--Sobic005G110481 Sobic007G101300--Sobic003G128400 Sobic002G013700 Sobic002G013700 Sobic007G101300--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic007G101300--Sobic009G104700 Sobic007G101300--Sobic001G375000 Sobic001G281500 Sobic001G281500 Sobic007G101300--Sobic001G281500 Sobic001G099000 Sobic001G099000 Sobic007G101300--Sobic001G099000 Sobic007G101300--Sobic010G027200 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G045300--Sobic001G003900 Sobic002G181132 Sobic002G181132 Sobic003G045300--Sobic002G181132 Sobic009G092900 Sobic009G092900 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic003G045300--Sobic005G184300 Sobic003G045300--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic003G045300--Sobic008G090900 Sobic005G184300--Sobic001G099000 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic005G184300--Sobic001G003900 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic003G432500 Sobic003G432500 Sobic006G055800--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic001G382800 Sobic001G382800 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic004G179200 Sobic004G179200 Sobic002G297400--Sobic004G179200 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic002G297400--Sobic005G184300 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic010G255100--Sobic006G256600 Sobic003G085000 Sobic003G085000 Sobic010G255100--Sobic003G085000 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic010G255100--Sobic005G014700 Sobic010G255100--Sobic003G128400 Sobic006G210400 Sobic006G210400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500
Octagon: transcription factors


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