Gene annotation
Transcriptome id Sobic.008G130900.1
Synonym RFC3, Sb08g018320
Functional annotation ribosomal protein S6, putative, expressed
UniProt C5YPU4
Pfam PF01250
Panther DB PTHR21011 PTHR21011:SF4
NCBI CDD KOG4708; Mitochondrial ribosomal protein MRP17
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G17170 : Translation elongation factor EF1B/ribosomal protein S6 family protein
RAP-DB (Rice) LOC_Os12g37610.1 : ribosomal protein S6, putative, expressed
MaizeGDB (Corn) Zm00025a025459 , Zm00025a004169
Brachypodium KQJ86303
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
3 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
5 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
7 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
8 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
9 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
10 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
11 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
12 Sobic.004G065300 CR084 protein, putative, expressed -
13 Sobic.003G271900 expressed protein -
14 Sobic.001G305700 Mur ligase family protein, putative, expressed -
15 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
16 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
17 Sobic.004G333400 COBW domain containing protein, putative, expressed -
18 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
19 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
20 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic008G130900 Sobic008G130900 Sobic001G375000 Sobic001G375000 Sobic008G130900--Sobic001G375000 Sobic006G055800 Sobic006G055800 Sobic008G130900--Sobic006G055800 Sobic003G128400 Sobic003G128400 Sobic008G130900--Sobic003G128400 Sobic005G002900 Sobic005G002900 Sobic008G130900--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic002G181000 Sobic002G181000 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic002G131700 Sobic002G131700 Sobic008G130900--Sobic002G131700 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic006G055800--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic006G055800--Sobic003G324700 Sobic006G055800--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic005G002900--Sobic009G148500 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700 Sobic009G131600--Sobic006G055800 Sobic007G171800 Sobic007G171800 Sobic009G131600--Sobic007G171800 Sobic010G035200 Sobic010G035200 Sobic009G131600--Sobic010G035200 Sobic009G131600--Sobic003G324700 Sobic009G131600--Sobic002G131700 Sobic009G131600--Sobic003G128400 Sobic007G090400 Sobic007G090400 Sobic009G131600--Sobic007G090400 Sobic009G131600--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic009G131600--Sobic002G056800 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G271900 Sobic003G271900 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic008G073100 Sobic008G073100 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G083100--Sobic001G054100 Sobic001G083100--Sobic008G073100 Sobic004G179200 Sobic004G179200 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic002G131700--Sobic001G083100
Octagon: transcription factors


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