Gene annotation
Transcriptome id Sobic.006G186600.1,Sobic.006G186600.2
Synonym DHDPS2, Sb06g026060
Functional annotation dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
UniProt C5YEF4 , A0A1Z5RF38
Pfam PF00701
Panther DB PTHR12128 PTHR12128:SF15
NCBI CDD -
KEGG Orthology K01714; 4-hydroxy-tetrahydrodipicolinate synthase
Gene Ontology GO:0016829; lyase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G45440 : dihydrodipicolinate synthase
RAP-DB (Rice) LOC_Os04g48540.1,LOC_Os04g18200.1 : dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a010128
Brachypodium KQK04713 , KQJ84143 , KQJ84142
Barley HORVU2Hr1G094420.6 , HORVU2Hr1G094420.5 , HORVU2Hr1G094420.7 , HORVU2Hr1G113410.1 , HORVU2Hr1G113410.2 , HORVU2Hr1G113410.3 , HORVU2Hr1G094420.3 , HORVU2Hr1G094420.2 , HORVU2Hr1G113410.6 , HORVU2Hr1G113410.4 , HORVU2Hr1G113410.5 , HORVU2Hr1G094420.1 , HORVU2Hr1G113450.1 , HORVU2Hr1G113450.4 , HORVU2Hr1G113450.5 , HORVU2Hr1G094420.4 , HORVU2Hr1G113450.2 , HORVU2Hr1G113450.3
Wheat TraesCS2A02G397900 , TraesCS2D02G395600 , TraesCS2A02G397900 , TraesCS2D02G513500 , TraesCS2D02G513500 , TraesCS2A02G511900
Populus -


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cDNA sequences
Sobic.006G186600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
2 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
3 Sobic.004G333400 COBW domain containing protein, putative, expressed -
4 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
5 Sobic.009G193500 AGAP007115-PA, putative, expressed -
6 Sobic.006G094300 expressed protein -
7 Sobic.008G130900 ribosomal protein S6, putative, expressed -
8 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
9 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
10 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
12 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
13 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
14 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
15 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -
16 Sobic.006G256600 expressed protein -
17 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
18 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
19 Sobic.001G524300 diacylglycerol kinase, putative, expressed -
20 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G186600 Sobic006G186600 Sobic001G102500 Sobic001G102500 Sobic006G186600--Sobic001G102500 Sobic002G431300 Sobic002G431300 Sobic006G186600--Sobic002G431300 Sobic004G333400 Sobic004G333400 Sobic006G186600--Sobic004G333400 Sobic008G089500 Sobic008G089500 Sobic006G186600--Sobic008G089500 Sobic009G193500 Sobic009G193500 Sobic006G186600--Sobic009G193500 Sobic006G094300 Sobic006G094300 Sobic006G186600--Sobic006G094300 Sobic008G130900 Sobic008G130900 Sobic006G186600--Sobic008G130900 Sobic010G109600 Sobic010G109600 Sobic006G186600--Sobic010G109600 Sobic005G002900 Sobic005G002900 Sobic006G186600--Sobic005G002900 Sobic003G067100 Sobic003G067100 Sobic001G102500--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic001G102500--Sobic005G014700 Sobic010G255100 Sobic010G255100 Sobic001G102500--Sobic010G255100 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic003G434700 Sobic003G434700 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic004G238900 Sobic004G238900 Sobic001G102500--Sobic004G238900 Sobic004G359100 Sobic004G359100 Sobic002G431300--Sobic004G359100 Sobic003G234900 Sobic003G234900 Sobic002G431300--Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic002G431300--Sobic004G163800 Sobic002G043600 Sobic002G043600 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic002G431300--Sobic006G186600 Sobic006G038500 Sobic006G038500 Sobic002G431300--Sobic006G038500 Sobic002G343400 Sobic002G343400 Sobic002G431300--Sobic002G343400 Sobic003G232700 Sobic003G232700 Sobic002G431300--Sobic003G232700 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic001G450600 Sobic001G450600 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic008G089500--Sobic005G002900 Sobic001G495200 Sobic001G495200 Sobic008G089500--Sobic001G495200 Sobic008G089500--Sobic001G283700 Sobic008G089500--Sobic004G333400 Sobic004G179200 Sobic004G179200 Sobic008G089500--Sobic004G179200 Sobic008G089500--Sobic003G334100 Sobic001G025400 Sobic001G025400 Sobic008G089500--Sobic001G025400 Sobic003G286300 Sobic003G286300 Sobic008G089500--Sobic003G286300 Sobic008G089500--Sobic002G181000 Sobic004G026500 Sobic004G026500 Sobic009G193500--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic009G193500--Sobic002G339300 Sobic002G276100 Sobic002G276100 Sobic009G193500--Sobic002G276100 Sobic001G124100 Sobic001G124100 Sobic009G193500--Sobic001G124100 Sobic007G103100 Sobic007G103100 Sobic009G193500--Sobic007G103100 Sobic002G168500 Sobic002G168500 Sobic009G193500--Sobic002G168500 Sobic008G172300 Sobic008G172300 Sobic009G193500--Sobic008G172300 Sobic001G219700 Sobic001G219700 Sobic009G193500--Sobic001G219700 Sobic009G193500--Sobic006G186600 Sobic006G094300--Sobic006G186600 Sobic006G094300--Sobic002G431300 Sobic006G088000 Sobic006G088000 Sobic006G094300--Sobic006G088000 Sobic006G094300--Sobic004G359100 Sobic005G072100 Sobic005G072100 Sobic006G094300--Sobic005G072100 Sobic003G083400 Sobic003G083400 Sobic006G094300--Sobic003G083400 Sobic006G094300--Sobic002G043600 Sobic006G094300--Sobic001G495200 Sobic006G094300--Sobic001G102500 Sobic001G375000 Sobic001G375000 Sobic008G130900--Sobic001G375000 Sobic006G055800 Sobic006G055800 Sobic008G130900--Sobic006G055800 Sobic003G128400 Sobic003G128400 Sobic008G130900--Sobic003G128400 Sobic008G130900--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic002G131700 Sobic002G131700 Sobic008G130900--Sobic002G131700 Sobic010G197000 Sobic010G197000 Sobic010G109600--Sobic010G197000 Sobic010G109600--Sobic004G333400 Sobic003G084500 Sobic003G084500 Sobic010G109600--Sobic003G084500 Sobic003G141100 Sobic003G141100 Sobic010G109600--Sobic003G141100 Sobic010G109600--Sobic001G450600 Sobic009G014100 Sobic009G014100 Sobic010G109600--Sobic009G014100 Sobic010G109600--Sobic001G102500 Sobic010G109600--Sobic001G283700 Sobic010G109600--Sobic008G172300 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic009G148500 Sobic009G148500 Sobic005G002900--Sobic009G148500 Sobic001G469933 Sobic001G469933 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic005G002900--Sobic003G432500 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700
Octagon: transcription factors


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