Gene annotation
Transcriptome id Sobic.006G094300.2,Sobic.006G094300.1,Sobic.006G094300.4,Sobic.006G094300.3
Synonym
Functional annotation expressed protein
UniProt A0A1Z5RD20 , A0A1B6PL46 , A0A1Z5RD38
Pfam -
Panther DB PTHR33065 PTHR33065:SF20 PTHR33065 PTHR33065:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g45195.1,LOC_Os07g45194.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ88813
Barley HORVU7Hr1G099870.2 , HORVU7Hr1G099870.3 , HORVU7Hr1G099870.4 , HORVU7Hr1G099870.5
Wheat TraesCS5D02G150200 , TraesCS7A02G438800 , TraesCS7A02G438900 , TraesCS7A02G438600 , TraesCS1D02G104100 , TraesCS5B02G140500 , TraesCS7A02G435900 , TraesCS5B02G140800 , TraesCS7D02G428500 , TraesCS7B02G337600 , TraesCS7A02G438700 , TraesCS5A02G282100 , TraesCS6D02G064000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
2 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
3 Sobic.006G088000 translocon Tic40, putative, expressed -
4 Sobic.004G359100 expressed protein -
5 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
6 Sobic.003G083400 cytoskeletal protein, putative, expressed -
7 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
8 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
9 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
10 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
11 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
12 Sobic.008G090900 expressed protein -
13 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
14 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
15 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
16 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
17 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
18 Sobic.002G343400 tic20, putative, expressed -
19 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
20 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase


Gene co-expression network
sample Sobic006G094300 Sobic006G094300 Sobic006G186600 Sobic006G186600 Sobic006G094300--Sobic006G186600 Sobic002G431300 Sobic002G431300 Sobic006G094300--Sobic002G431300 Sobic006G088000 Sobic006G088000 Sobic006G094300--Sobic006G088000 Sobic004G359100 Sobic004G359100 Sobic006G094300--Sobic004G359100 Sobic005G072100 Sobic005G072100 Sobic006G094300--Sobic005G072100 Sobic003G083400 Sobic003G083400 Sobic006G094300--Sobic003G083400 Sobic002G043600 Sobic002G043600 Sobic006G094300--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic006G094300--Sobic001G495200 Sobic001G102500 Sobic001G102500 Sobic006G094300--Sobic001G102500 Sobic006G186600--Sobic001G102500 Sobic006G186600--Sobic002G431300 Sobic004G333400 Sobic004G333400 Sobic006G186600--Sobic004G333400 Sobic008G089500 Sobic008G089500 Sobic006G186600--Sobic008G089500 Sobic009G193500 Sobic009G193500 Sobic006G186600--Sobic009G193500 Sobic006G186600--Sobic006G094300 Sobic008G130900 Sobic008G130900 Sobic006G186600--Sobic008G130900 Sobic010G109600 Sobic010G109600 Sobic006G186600--Sobic010G109600 Sobic005G002900 Sobic005G002900 Sobic006G186600--Sobic005G002900 Sobic002G431300--Sobic004G359100 Sobic003G234900 Sobic003G234900 Sobic002G431300--Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic002G431300--Sobic004G163800 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic002G431300--Sobic006G186600 Sobic006G038500 Sobic006G038500 Sobic002G431300--Sobic006G038500 Sobic002G343400 Sobic002G343400 Sobic002G431300--Sobic002G343400 Sobic003G232700 Sobic003G232700 Sobic002G431300--Sobic003G232700 Sobic001G375000 Sobic001G375000 Sobic006G088000--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic006G088000--Sobic003G128400 Sobic004G003900 Sobic004G003900 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic003G162800 Sobic003G162800 Sobic006G088000--Sobic003G162800 Sobic003G045300 Sobic003G045300 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic008G090900 Sobic008G090900 Sobic006G088000--Sobic008G090900 Sobic004G359100--Sobic002G343400 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G238900 Sobic004G238900 Sobic004G359100--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic004G359100--Sobic003G067100 Sobic004G359100--Sobic010G255100 Sobic004G359100--Sobic003G083400 Sobic004G359100--Sobic001G375000 Sobic004G359100--Sobic006G088000 Sobic003G434700 Sobic003G434700 Sobic005G072100--Sobic003G434700 Sobic005G072100--Sobic003G067100 Sobic009G129100 Sobic009G129100 Sobic005G072100--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic005G072100--Sobic003G168100 Sobic002G127550 Sobic002G127550 Sobic005G072100--Sobic002G127550 Sobic002G316600 Sobic002G316600 Sobic005G072100--Sobic002G316600 Sobic001G145000 Sobic001G145000 Sobic005G072100--Sobic001G145000 Sobic005G072100--Sobic003G234900 Sobic004G244900 Sobic004G244900 Sobic005G072100--Sobic004G244900 Sobic003G083400--Sobic004G359100 Sobic002G411400 Sobic002G411400 Sobic003G083400--Sobic002G411400 Sobic003G083400--Sobic003G128400 Sobic003G083400--Sobic001G375000 Sobic003G083400--Sobic004G238900 Sobic003G083400--Sobic006G088000 Sobic004G011300 Sobic004G011300 Sobic003G083400--Sobic004G011300 Sobic004G336000 Sobic004G336000 Sobic003G083400--Sobic004G336000 Sobic003G083400--Sobic008G130900 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic002G043600--Sobic004G011300 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic001G495200--Sobic004G336000 Sobic001G495200--Sobic004G011300 Sobic005G143500 Sobic005G143500 Sobic001G495200--Sobic005G143500 Sobic006G106400 Sobic006G106400 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic001G495200--Sobic002G043600 Sobic001G102500--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic001G102500--Sobic005G014700 Sobic001G102500--Sobic010G255100 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic001G102500--Sobic004G238900
Octagon: transcription factors


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