Gene annotation
Transcriptome id Sobic.005G014700.3,Sobic.005G014700.1,Sobic.005G014700.2,Sobic.005G014700.4
Synonym ATCPNIFS, CPNIFS, ATNFS2, SUFS, Sb05g001270, ATSUFS
Functional annotation aminotransferase, putative, expressed
UniProt A0A1Z5RG64 , A0A1B6PPN2 , A0A1B6PPN4
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF17
NCBI CDD KOG1549; Cysteine desulfurase NFS1
KEGG Orthology K11717; cysteine desulfurase / selenocysteine lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08490 : chloroplastic NIFS-like cysteine desulfurase
RAP-DB (Rice) LOC_Os12g18900.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a033319
Brachypodium KQJ89436
Barley HORVU4Hr1G023100.30 , HORVU4Hr1G023100.31 , HORVU4Hr1G023100.32 , HORVU4Hr1G023100.33
Wheat TraesCS4D02G120100 , TraesCS4B02G122000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
2 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
3 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
4 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
5 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
6 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
7 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
8 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
9 Sobic.001G032700 heat shock protein DnaJ, putative, expressed -
10 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
11 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.009G164400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
13 Sobic.006G088000 translocon Tic40, putative, expressed -
14 Sobic.003G352500 ribonuclease protein, putative, expressed -
15 Sobic.002G168500 NBS-LRR type disease resistance protein, putative, expressed -
16 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
17 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
18 Sobic.002G343400 tic20, putative, expressed -
19 Sobic.001G516901 - -
20 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase


Gene co-expression network
sample Sobic005G014700 Sobic005G014700 Sobic003G067100 Sobic003G067100 Sobic005G014700--Sobic003G067100 Sobic001G102500 Sobic001G102500 Sobic005G014700--Sobic001G102500 Sobic002G043600 Sobic002G043600 Sobic005G014700--Sobic002G043600 Sobic001G327800 Sobic001G327800 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic004G238900 Sobic004G238900 Sobic005G014700--Sobic004G238900 Sobic004G163800 Sobic004G163800 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic001G032700 Sobic001G032700 Sobic005G014700--Sobic001G032700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic003G067100--Sobic004G163800 Sobic001G102500--Sobic003G067100 Sobic001G102500--Sobic005G014700 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic001G102500--Sobic004G238900 Sobic003G232700 Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic002G231200 Sobic002G231200 Sobic001G327800--Sobic002G231200 Sobic001G327800--Sobic005G014700 Sobic001G327800--Sobic004G163800 Sobic003G343400 Sobic003G343400 Sobic001G327800--Sobic003G343400 Sobic005G082200 Sobic005G082200 Sobic001G327800--Sobic005G082200 Sobic009G164400 Sobic009G164400 Sobic001G327800--Sobic009G164400 Sobic001G327800--Sobic001G032700 Sobic004G054400 Sobic004G054400 Sobic001G327800--Sobic004G054400 Sobic001G327800--Sobic003G067100 Sobic006G256600 Sobic006G256600 Sobic010G255100--Sobic006G256600 Sobic003G085000 Sobic003G085000 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic006G055800 Sobic006G055800 Sobic010G255100--Sobic006G055800 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic010G255100--Sobic001G102500 Sobic004G238900--Sobic003G067100 Sobic004G238900--Sobic005G014700 Sobic004G359100 Sobic004G359100 Sobic004G238900--Sobic004G359100 Sobic004G238900--Sobic001G102500 Sobic002G343400 Sobic002G343400 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic007G023200 Sobic007G023200 Sobic004G238900--Sobic007G023200 Sobic004G238900--Sobic010G255100 Sobic004G238900--Sobic004G163800 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic002G431300 Sobic002G431300 Sobic004G163800--Sobic002G431300 Sobic004G238200 Sobic004G238200 Sobic004G163800--Sobic004G238200 Sobic004G163800--Sobic001G327800 Sobic004G163800--Sobic002G343400 Sobic003G162800 Sobic003G162800 Sobic002G156100--Sobic003G162800 Sobic001G375000 Sobic001G375000 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic002G156100--Sobic001G382800 Sobic003G045300 Sobic003G045300 Sobic002G156100--Sobic003G045300 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic001G032700--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic001G032700--Sobic001G512500 Sobic001G032700--Sobic001G327800 Sobic001G032700--Sobic005G014700 Sobic001G032700--Sobic004G163800 Sobic001G032700--Sobic003G343400 Sobic001G309300 Sobic001G309300 Sobic001G032700--Sobic001G309300 Sobic001G032700--Sobic001G308200 Sobic001G032700--Sobic002G231200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.