Gene annotation
Transcriptome id Sobic.009G164400.1,Sobic.009G164400.2
Synonym Sb09g022630
Functional annotation expressed protein
UniProt C5YZA4
Pfam PF04387
Panther DB PTHR11035
NCBI CDD KOG3187; Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg)
KEGG Orthology K10703; HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59770 : Protein-tyrosine phosphatase-like, PTPLA
RAP-DB (Rice) LOC_Os05g38590.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium PNT71108
Barley HORVU1Hr1G072170.29 , HORVU1Hr1G072170.28 , HORVU1Hr1G072170.24 , HORVU1Hr1G072170.26 , HORVU1Hr1G072170.20 , HORVU1Hr1G072170.23 , HORVU1Hr1G072170.22 , HORVU1Hr1G072170.32 , HORVU1Hr1G072170.33 , HORVU1Hr1G072170.30 , HORVU1Hr1G072170.18 , HORVU1Hr1G072170.19 , HORVU1Hr1G072170.10 , HORVU1Hr1G072170.11 , HORVU1Hr1G072170.12 , HORVU1Hr1G072170.13 , HORVU1Hr1G072170.14 , HORVU1Hr1G072170.15 , HORVU1Hr1G072170.16 , HORVU1Hr1G072170.17 , HORVU1Hr1G072170.8 , HORVU1Hr1G072170.9 , HORVU1Hr1G072170.2 , HORVU1Hr1G072170.3 , HORVU1Hr1G072170.1 , HORVU1Hr1G072170.6 , HORVU1Hr1G072170.4 , HORVU1Hr1G072170.5
Wheat TraesCS1A02G285600 , TraesCS1B02G294800 , TraesCS1B02G295000 , TraesCS1B02G295000 , TraesCS1D02G284600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
2 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
3 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
4 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
5 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
6 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
7 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
8 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
9 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
10 Sobic.002G168300 RGH2B, putative, expressed -
11 Sobic.001G512500 expressed protein -
12 Sobic.002G343400 tic20, putative, expressed -
13 Sobic.003G369400 expressed protein -
14 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
15 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
16 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
18 Sobic.001G032700 heat shock protein DnaJ, putative, expressed -
19 Sobic.004G359100 expressed protein -
20 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -


Gene co-expression network
sample Sobic009G164400 Sobic009G164400 Sobic001G327800 Sobic001G327800 Sobic009G164400--Sobic001G327800 Sobic005G014700 Sobic005G014700 Sobic009G164400--Sobic005G014700 Sobic002G118200 Sobic002G118200 Sobic009G164400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic009G164400--Sobic005G084500 Sobic004G163800 Sobic004G163800 Sobic009G164400--Sobic004G163800 Sobic007G005400 Sobic007G005400 Sobic009G164400--Sobic007G005400 Sobic002G231200 Sobic002G231200 Sobic009G164400--Sobic002G231200 Sobic005G082200 Sobic005G082200 Sobic009G164400--Sobic005G082200 Sobic003G067100 Sobic003G067100 Sobic009G164400--Sobic003G067100 Sobic001G327800--Sobic002G231200 Sobic001G327800--Sobic005G014700 Sobic001G327800--Sobic004G163800 Sobic003G343400 Sobic003G343400 Sobic001G327800--Sobic003G343400 Sobic001G327800--Sobic005G082200 Sobic001G327800--Sobic009G164400 Sobic001G032700 Sobic001G032700 Sobic001G327800--Sobic001G032700 Sobic004G054400 Sobic004G054400 Sobic001G327800--Sobic004G054400 Sobic001G327800--Sobic003G067100 Sobic005G014700--Sobic003G067100 Sobic001G102500 Sobic001G102500 Sobic005G014700--Sobic001G102500 Sobic002G043600 Sobic002G043600 Sobic005G014700--Sobic002G043600 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic004G238900 Sobic004G238900 Sobic005G014700--Sobic004G238900 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic005G014700--Sobic001G032700 Sobic002G118200--Sobic007G005400 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic005G084500--Sobic007G005400 Sobic005G084500--Sobic002G118200 Sobic004G238200 Sobic004G238200 Sobic005G084500--Sobic004G238200 Sobic004G337400 Sobic004G337400 Sobic005G084500--Sobic004G337400 Sobic006G219600 Sobic006G219600 Sobic005G084500--Sobic006G219600 Sobic005G084500--Sobic004G019800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic001G516901 Sobic001G516901 Sobic005G084500--Sobic001G516901 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic003G234900 Sobic003G234900 Sobic004G163800--Sobic003G234900 Sobic003G232700 Sobic003G232700 Sobic004G163800--Sobic003G232700 Sobic004G163800--Sobic005G084500 Sobic002G431300 Sobic002G431300 Sobic004G163800--Sobic002G431300 Sobic004G163800--Sobic004G238200 Sobic004G163800--Sobic001G327800 Sobic002G343400 Sobic002G343400 Sobic004G163800--Sobic002G343400 Sobic007G005400--Sobic003G085100 Sobic007G005400--Sobic002G118200 Sobic007G005400--Sobic005G084500 Sobic007G005400--Sobic004G238200 Sobic003G150800 Sobic003G150800 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic002G231200--Sobic001G327800 Sobic001G261573 Sobic001G261573 Sobic002G231200--Sobic001G261573 Sobic002G231200--Sobic003G343400 Sobic002G231200--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic002G231200--Sobic006G010900 Sobic002G231200--Sobic003G085100 Sobic002G231200--Sobic001G531500 Sobic002G231200--Sobic002G118200 Sobic002G231200--Sobic003G150800 Sobic008G051300 Sobic008G051300 Sobic005G082200--Sobic008G051300 Sobic005G082200--Sobic001G327800 Sobic004G359100 Sobic004G359100 Sobic005G082200--Sobic004G359100 Sobic005G082200--Sobic002G343400 Sobic005G082200--Sobic003G067100 Sobic002G424700 Sobic002G424700 Sobic005G082200--Sobic002G424700 Sobic005G072100 Sobic005G072100 Sobic005G082200--Sobic005G072100 Sobic005G082200--Sobic004G054400 Sobic002G293600 Sobic002G293600 Sobic005G082200--Sobic002G293600 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic003G067100--Sobic004G163800
Octagon: transcription factors


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