Gene annotation
Transcriptome id Sobic.002G343400.2,Sobic.002G343400.1
Synonym TIC20, Sb02g036720
Functional annotation tic20, putative, expressed
UniProt C5XBP3
Pfam PF16166
Panther DB PTHR33510 PTHR33510:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04940 : translocon at the inner envelope membrane of chloroplasts 20
RAP-DB (Rice) LOC_Os07g38110.2,LOC_Os07g38110.1 : tic20, putative, expressed
MaizeGDB (Corn) Zm00025a048433 , Zm00025a014940
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G343400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G359100 expressed protein -
2 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
3 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
4 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
5 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
6 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
7 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
8 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
9 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
10 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
11 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
12 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
13 Sobic.007G095500 expressed protein -
14 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
15 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
16 Sobic.001G120500 toc64, putative, expressed -
17 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
18 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
19 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
20 Sobic.008G090900 expressed protein -


Gene co-expression network
sample Sobic002G343400 Sobic002G343400 Sobic004G359100 Sobic004G359100 Sobic002G343400--Sobic004G359100 Sobic004G163800 Sobic004G163800 Sobic002G343400--Sobic004G163800 Sobic003G234900 Sobic003G234900 Sobic002G343400--Sobic003G234900 Sobic001G382800 Sobic001G382800 Sobic002G343400--Sobic001G382800 Sobic001G401700 Sobic001G401700 Sobic002G343400--Sobic001G401700 Sobic001G327800 Sobic001G327800 Sobic002G343400--Sobic001G327800 Sobic002G431300 Sobic002G431300 Sobic002G343400--Sobic002G431300 Sobic004G238900 Sobic004G238900 Sobic002G343400--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic002G343400--Sobic003G067100 Sobic004G359100--Sobic002G343400 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G359100--Sobic004G238900 Sobic004G359100--Sobic003G067100 Sobic010G255100 Sobic010G255100 Sobic004G359100--Sobic010G255100 Sobic003G083400 Sobic003G083400 Sobic004G359100--Sobic003G083400 Sobic001G375000 Sobic001G375000 Sobic004G359100--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic004G359100--Sobic006G088000 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic002G043600 Sobic002G043600 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic003G232700 Sobic003G232700 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic004G163800--Sobic002G431300 Sobic004G238200 Sobic004G238200 Sobic004G163800--Sobic004G238200 Sobic004G163800--Sobic001G327800 Sobic004G163800--Sobic002G343400 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic001G382800--Sobic010G255100 Sobic003G128400 Sobic003G128400 Sobic001G382800--Sobic003G128400 Sobic008G090900 Sobic008G090900 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic002G156100 Sobic002G156100 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic003G045300 Sobic003G045300 Sobic001G382800--Sobic003G045300 Sobic001G433100 Sobic001G433100 Sobic001G401700--Sobic001G433100 Sobic001G401700--Sobic006G088000 Sobic001G401700--Sobic002G343400 Sobic001G401700--Sobic004G359100 Sobic001G401700--Sobic008G090900 Sobic001G401700--Sobic001G382800 Sobic006G217000 Sobic006G217000 Sobic001G401700--Sobic006G217000 Sobic004G003900 Sobic004G003900 Sobic001G401700--Sobic004G003900 Sobic001G120500 Sobic001G120500 Sobic001G401700--Sobic001G120500 Sobic002G231200 Sobic002G231200 Sobic001G327800--Sobic002G231200 Sobic005G014700 Sobic005G014700 Sobic001G327800--Sobic005G014700 Sobic001G327800--Sobic004G163800 Sobic003G343400 Sobic003G343400 Sobic001G327800--Sobic003G343400 Sobic001G327800--Sobic005G082200 Sobic009G164400 Sobic009G164400 Sobic001G327800--Sobic009G164400 Sobic001G032700 Sobic001G032700 Sobic001G327800--Sobic001G032700 Sobic004G054400 Sobic004G054400 Sobic001G327800--Sobic004G054400 Sobic001G327800--Sobic003G067100 Sobic002G431300--Sobic004G359100 Sobic002G431300--Sobic003G234900 Sobic002G431300--Sobic004G163800 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic006G186600 Sobic006G186600 Sobic002G431300--Sobic006G186600 Sobic002G431300--Sobic006G038500 Sobic002G431300--Sobic002G343400 Sobic002G431300--Sobic003G232700 Sobic004G238900--Sobic003G067100 Sobic004G238900--Sobic005G014700 Sobic004G238900--Sobic004G359100 Sobic001G102500 Sobic001G102500 Sobic004G238900--Sobic001G102500 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic007G023200 Sobic007G023200 Sobic004G238900--Sobic007G023200 Sobic004G238900--Sobic010G255100 Sobic004G238900--Sobic004G163800 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic003G067100--Sobic004G163800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.