Gene annotation
Transcriptome id Sobic.001G102500.1
Synonym ISPH, CLB6, HDR, Sb01g009140
Functional annotation 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
UniProt C5WLY2
Pfam PF02401
Panther DB PTHR31619 PTHR31619:SF2
NCBI CDD -
KEGG Orthology K03527; ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34350 : 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
RAP-DB (Rice) LOC_Os03g52170.1 : 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a008020
Brachypodium KQK13371
Barley -
Wheat TraesCS4A02G251600 , TraesCS4D02G061800 , TraesCS4B02G062800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
2 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
3 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
4 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
5 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.002G168300 RGH2B, putative, expressed -
7 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
8 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
9 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
10 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
11 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
12 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
14 Sobic.006G256600 expressed protein -
15 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
16 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
17 Sobic.004G333400 COBW domain containing protein, putative, expressed -
18 Sobic.001G516901 - -
19 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
20 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G102500 Sobic001G102500 Sobic003G067100 Sobic003G067100 Sobic001G102500--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic001G102500--Sobic005G014700 Sobic010G255100 Sobic010G255100 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic003G434700 Sobic003G434700 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic004G238900 Sobic004G238900 Sobic001G102500--Sobic004G238900 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic005G014700--Sobic003G067100 Sobic005G014700--Sobic001G102500 Sobic005G014700--Sobic002G043600 Sobic001G327800 Sobic001G327800 Sobic005G014700--Sobic001G327800 Sobic005G014700--Sobic010G255100 Sobic005G014700--Sobic004G238900 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic001G032700 Sobic001G032700 Sobic005G014700--Sobic001G032700 Sobic006G256600 Sobic006G256600 Sobic010G255100--Sobic006G256600 Sobic003G085000 Sobic003G085000 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic006G055800 Sobic006G055800 Sobic010G255100--Sobic006G055800 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic010G255100--Sobic001G102500 Sobic006G186600--Sobic001G102500 Sobic002G431300 Sobic002G431300 Sobic006G186600--Sobic002G431300 Sobic004G333400 Sobic004G333400 Sobic006G186600--Sobic004G333400 Sobic008G089500 Sobic008G089500 Sobic006G186600--Sobic008G089500 Sobic009G193500 Sobic009G193500 Sobic006G186600--Sobic009G193500 Sobic006G094300 Sobic006G094300 Sobic006G186600--Sobic006G094300 Sobic008G130900 Sobic008G130900 Sobic006G186600--Sobic008G130900 Sobic010G109600 Sobic010G109600 Sobic006G186600--Sobic010G109600 Sobic005G002900 Sobic005G002900 Sobic006G186600--Sobic005G002900 Sobic003G170200--Sobic001G102500 Sobic007G205600 Sobic007G205600 Sobic003G170200--Sobic007G205600 Sobic008G078900 Sobic008G078900 Sobic003G170200--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic001G514100 Sobic001G514100 Sobic003G170200--Sobic001G514100 Sobic001G375000 Sobic001G375000 Sobic003G170200--Sobic001G375000 Sobic001G450600 Sobic001G450600 Sobic003G170200--Sobic001G450600 Sobic003G170200--Sobic003G128400 Sobic004G248400 Sobic004G248400 Sobic002G168300--Sobic004G248400 Sobic008G172300 Sobic008G172300 Sobic002G168300--Sobic008G172300 Sobic003G381200 Sobic003G381200 Sobic002G168300--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G168300--Sobic004G026500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic009G014100 Sobic009G014100 Sobic002G168300--Sobic009G014100 Sobic002G168300--Sobic004G333400 Sobic001G219700 Sobic001G219700 Sobic002G168300--Sobic001G219700 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic003G434700--Sobic001G375000 Sobic003G434700--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G210400--Sobic006G256600 Sobic003G141100 Sobic003G141100 Sobic006G210400--Sobic003G141100 Sobic002G297400 Sobic002G297400 Sobic006G210400--Sobic002G297400 Sobic003G387100 Sobic003G387100 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800 Sobic004G238900--Sobic003G067100 Sobic004G238900--Sobic005G014700 Sobic004G359100 Sobic004G359100 Sobic004G238900--Sobic004G359100 Sobic004G238900--Sobic001G102500 Sobic002G343400 Sobic002G343400 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic004G238900--Sobic007G023200 Sobic004G238900--Sobic010G255100 Sobic004G238900--Sobic004G163800
Octagon: transcription factors


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