Gene annotation
Transcriptome id Sobic.003G381200.1
Synonym Sb03g042090
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XEN5
Pfam PF16544
Panther DB PTHR11208 PTHR11208:SF60
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09660 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os01g66300.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026518
Brachypodium KQK10947
Barley HORVU3Hr1G090670.5 , HORVU3Hr1G090670.4 , HORVU3Hr1G090670.3 , HORVU3Hr1G090670.1
Wheat TraesCS3A02G404200 , TraesCS3D02G399400 , TraesCS3B02G437700
Populus -


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cDNA sequences
Sobic.003G381200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
2 Sobic.001G159400 protein kinase domain containing protein, expressed -
3 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
4 Sobic.002G168300 RGH2B, putative, expressed -
5 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
6 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
7 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
8 Sobic.003G138500 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
9 Sobic.004G026500 expressed protein -
10 Sobic.002G168500 NBS-LRR type disease resistance protein, putative, expressed -
11 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
12 Sobic.009G193500 AGAP007115-PA, putative, expressed -
13 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
14 Sobic.002G127550 - -
15 Sobic.004G359800 inositol-1-monophosphatase, putative, expressed -
16 Sobic.010G176550 - -
17 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
18 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
19 Sobic.004G181700 calmodulin binding protein, putative, expressed -
20 Sobic.002G425700 ribonucleases P/MRP protein subunit POP1 containing protein, expressed K01164: ribonuclease P/MRP protein subunit POP1


Gene co-expression network
sample Sobic003G381200 Sobic003G381200 Sobic001G090500 Sobic001G090500 Sobic003G381200--Sobic001G090500 Sobic001G159400 Sobic001G159400 Sobic003G381200--Sobic001G159400 Sobic002G276100 Sobic002G276100 Sobic003G381200--Sobic002G276100 Sobic002G168300 Sobic002G168300 Sobic003G381200--Sobic002G168300 Sobic001G102500 Sobic001G102500 Sobic003G381200--Sobic001G102500 Sobic007G065100 Sobic007G065100 Sobic003G381200--Sobic007G065100 Sobic008G172300 Sobic008G172300 Sobic003G381200--Sobic008G172300 Sobic003G138500 Sobic003G138500 Sobic003G381200--Sobic003G138500 Sobic004G026500 Sobic004G026500 Sobic003G381200--Sobic004G026500 Sobic001G090500--Sobic003G381200 Sobic001G090500--Sobic001G159400 Sobic003G106200 Sobic003G106200 Sobic001G090500--Sobic003G106200 Sobic007G193700 Sobic007G193700 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic004G317100 Sobic004G317100 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic002G031400 Sobic002G031400 Sobic001G090500--Sobic002G031400 Sobic001G159400--Sobic003G381200 Sobic001G159400--Sobic003G138500 Sobic001G159400--Sobic001G090500 Sobic010G256700 Sobic010G256700 Sobic001G159400--Sobic010G256700 Sobic001G159400--Sobic007G193700 Sobic001G159400--Sobic002G276100 Sobic003G396200 Sobic003G396200 Sobic001G159400--Sobic003G396200 Sobic004G181700 Sobic004G181700 Sobic001G159400--Sobic004G181700 Sobic001G159400--Sobic004G317100 Sobic002G276100--Sobic003G381200 Sobic002G276100--Sobic004G026500 Sobic002G276100--Sobic004G181700 Sobic002G276100--Sobic001G159400 Sobic010G138000 Sobic010G138000 Sobic002G276100--Sobic010G138000 Sobic002G168500 Sobic002G168500 Sobic002G276100--Sobic002G168500 Sobic009G193500 Sobic009G193500 Sobic002G276100--Sobic009G193500 Sobic002G276100--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic002G276100--Sobic001G268200 Sobic004G248400 Sobic004G248400 Sobic002G168300--Sobic004G248400 Sobic002G168300--Sobic008G172300 Sobic002G168300--Sobic003G381200 Sobic002G168300--Sobic004G026500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic009G014100 Sobic009G014100 Sobic002G168300--Sobic009G014100 Sobic004G333400 Sobic004G333400 Sobic002G168300--Sobic004G333400 Sobic001G219700 Sobic001G219700 Sobic002G168300--Sobic001G219700 Sobic003G067100 Sobic003G067100 Sobic001G102500--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic001G102500--Sobic005G014700 Sobic010G255100 Sobic010G255100 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic001G102500--Sobic002G168300 Sobic003G434700 Sobic003G434700 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic004G238900 Sobic004G238900 Sobic001G102500--Sobic004G238900 Sobic002G425700 Sobic002G425700 Sobic007G065100--Sobic002G425700 Sobic002G181300 Sobic002G181300 Sobic007G065100--Sobic002G181300 Sobic007G065100--Sobic003G381200 Sobic007G065100--Sobic008G172300 Sobic007G065100--Sobic001G090500 Sobic001G498600 Sobic001G498600 Sobic007G065100--Sobic001G498600 Sobic001G072500 Sobic001G072500 Sobic007G065100--Sobic001G072500 Sobic006G153900 Sobic006G153900 Sobic007G065100--Sobic006G153900 Sobic006G119400 Sobic006G119400 Sobic007G065100--Sobic006G119400 Sobic008G172300--Sobic004G026500 Sobic008G172300--Sobic009G014100 Sobic003G340600 Sobic003G340600 Sobic008G172300--Sobic003G340600 Sobic002G345700 Sobic002G345700 Sobic008G172300--Sobic002G345700 Sobic001G124100 Sobic001G124100 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic005G142800 Sobic005G142800 Sobic008G172300--Sobic005G142800 Sobic008G172300--Sobic002G168300 Sobic002G167500 Sobic002G167500 Sobic008G172300--Sobic002G167500 Sobic002G127550 Sobic002G127550 Sobic003G138500--Sobic002G127550 Sobic003G138500--Sobic001G159400 Sobic004G034800 Sobic004G034800 Sobic003G138500--Sobic004G034800 Sobic004G359800 Sobic004G359800 Sobic003G138500--Sobic004G359800 Sobic010G176550 Sobic010G176550 Sobic003G138500--Sobic010G176550 Sobic007G116200 Sobic007G116200 Sobic003G138500--Sobic007G116200 Sobic003G138500--Sobic002G276100 Sobic003G138500--Sobic003G381200 Sobic001G186800 Sobic001G186800 Sobic003G138500--Sobic001G186800 Sobic004G026500--Sobic008G172300 Sobic004G026500--Sobic001G124100 Sobic004G026500--Sobic009G193500 Sobic004G026500--Sobic001G219700 Sobic001G072700 Sobic001G072700 Sobic004G026500--Sobic001G072700 Sobic002G339300 Sobic002G339300 Sobic004G026500--Sobic002G339300 Sobic003G203300 Sobic003G203300 Sobic004G026500--Sobic003G203300 Sobic007G227700 Sobic007G227700 Sobic004G026500--Sobic007G227700 Sobic004G026500--Sobic002G276100
Octagon: transcription factors


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