Gene annotation
Transcriptome id Sobic.007G065100.3
Synonym Sb07g005160, AtXRN3, XRN3
Functional annotation XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
UniProt A0A1Z5R981
Pfam PF03159
Panther DB PTHR12341 PTHR12341:SF30
NCBI CDD -
KEGG Orthology K12619; XRN2, 5'-3' exoribonuclease 2
Gene Ontology GO:0004527; exonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G75660 : 5\'-3\' exoribonuclease 3
RAP-DB (Rice) LOC_Os01g65220.1 : XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023976 , Zm00025a029985
Brachypodium PNT73282 , PNT73283 , KQK12727
Barley HORVU3Hr1G082310.9 , HORVU3Hr1G082310.8 , HORVU3Hr1G082310.3 , HORVU3Hr1G082310.2 , HORVU3Hr1G082310.1 , HORVU3Hr1G082310.7 , HORVU3Hr1G082310.6 , HORVU3Hr1G082310.5 , HORVU3Hr1G082310.4 , HORVU3Hr1G082310.19 , HORVU3Hr1G082310.18 , HORVU3Hr1G082310.13 , HORVU3Hr1G082310.12 , HORVU3Hr1G082310.11 , HORVU3Hr1G082310.10 , HORVU3Hr1G082310.17 , HORVU3Hr1G082310.16 , HORVU3Hr1G082310.15 , HORVU3Hr1G082310.14 , HORVU1Hr1G007880.1 , HORVU3Hr1G082310.22 , HORVU3Hr1G082310.23 , HORVU3Hr1G082310.20 , HORVU3Hr1G082310.21 , HORVU3Hr1G082310.26 , HORVU3Hr1G082310.27 , HORVU3Hr1G082310.24 , HORVU3Hr1G082310.25 , HORVU3Hr1G082310.28 , HORVU7Hr1G085250.3 , HORVU7Hr1G085250.2 , HORVU7Hr1G085250.1 , HORVU2Hr1G012300.1 , HORVU2Hr1G012300.2 , HORVU2Hr1G012300.3 , HORVU2Hr1G012300.4 , HORVU5Hr1G104860.8 , HORVU5Hr1G104860.2 , HORVU5Hr1G104860.3 , HORVU5Hr1G104860.1 , HORVU5Hr1G104860.6 , HORVU5Hr1G104860.7 , HORVU5Hr1G104860.4 , HORVU5Hr1G104860.5
Wheat TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS2B02G088800 , TraesCS5D02G442200 , TraesCS5A02G434400 , TraesCS5A02G434400 , TraesCS2D02G072800 , TraesCS5B02G437400 , TraesCS2A02G073800 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS2B02G088500 , TraesCS3B02G415500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G425700 ribonucleases P/MRP protein subunit POP1 containing protein, expressed K01164: ribonuclease P/MRP protein subunit POP1
2 Sobic.002G181300 expressed protein -
3 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
4 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
5 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
6 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
7 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
8 Sobic.006G153900 transporter, major facilitator family, putative, expressed -
9 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
10 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
11 Sobic.001G261501 - -
12 Sobic.008G016300 expressed protein -
13 Sobic.002G168500 NBS-LRR type disease resistance protein, putative, expressed -
14 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
15 Sobic.001G300100 - -
16 Sobic.005G074000 OsFBX411 - F-box domain containing protein, expressed -
17 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
18 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
19 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
20 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -


Gene co-expression network
sample Sobic007G065100 Sobic007G065100 Sobic002G425700 Sobic002G425700 Sobic007G065100--Sobic002G425700 Sobic002G181300 Sobic002G181300 Sobic007G065100--Sobic002G181300 Sobic003G381200 Sobic003G381200 Sobic007G065100--Sobic003G381200 Sobic008G172300 Sobic008G172300 Sobic007G065100--Sobic008G172300 Sobic001G090500 Sobic001G090500 Sobic007G065100--Sobic001G090500 Sobic001G498600 Sobic001G498600 Sobic007G065100--Sobic001G498600 Sobic001G072500 Sobic001G072500 Sobic007G065100--Sobic001G072500 Sobic006G153900 Sobic006G153900 Sobic007G065100--Sobic006G153900 Sobic006G119400 Sobic006G119400 Sobic007G065100--Sobic006G119400 Sobic002G425700--Sobic007G065100 Sobic002G425700--Sobic006G153900 Sobic002G276100 Sobic002G276100 Sobic002G425700--Sobic002G276100 Sobic007G165600 Sobic007G165600 Sobic002G425700--Sobic007G165600 Sobic010G143800 Sobic010G143800 Sobic002G425700--Sobic010G143800 Sobic001G261501 Sobic001G261501 Sobic002G425700--Sobic001G261501 Sobic002G425700--Sobic001G498600 Sobic005G122700 Sobic005G122700 Sobic002G425700--Sobic005G122700 Sobic002G425700--Sobic001G090500 Sobic002G181300--Sobic007G065100 Sobic004G317100 Sobic004G317100 Sobic002G181300--Sobic004G317100 Sobic004G131040 Sobic004G131040 Sobic002G181300--Sobic004G131040 Sobic004G181700 Sobic004G181700 Sobic002G181300--Sobic004G181700 Sobic002G181300--Sobic002G425700 Sobic002G181300--Sobic002G276100 Sobic010G000600 Sobic010G000600 Sobic002G181300--Sobic010G000600 Sobic002G181300--Sobic001G498600 Sobic005G044400 Sobic005G044400 Sobic002G181300--Sobic005G044400 Sobic003G381200--Sobic001G090500 Sobic001G159400 Sobic001G159400 Sobic003G381200--Sobic001G159400 Sobic003G381200--Sobic002G276100 Sobic002G168300 Sobic002G168300 Sobic003G381200--Sobic002G168300 Sobic001G102500 Sobic001G102500 Sobic003G381200--Sobic001G102500 Sobic003G381200--Sobic007G065100 Sobic003G381200--Sobic008G172300 Sobic003G138500 Sobic003G138500 Sobic003G381200--Sobic003G138500 Sobic004G026500 Sobic004G026500 Sobic003G381200--Sobic004G026500 Sobic008G172300--Sobic004G026500 Sobic009G014100 Sobic009G014100 Sobic008G172300--Sobic009G014100 Sobic003G340600 Sobic003G340600 Sobic008G172300--Sobic003G340600 Sobic002G345700 Sobic002G345700 Sobic008G172300--Sobic002G345700 Sobic001G124100 Sobic001G124100 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic005G142800 Sobic005G142800 Sobic008G172300--Sobic005G142800 Sobic008G172300--Sobic002G168300 Sobic002G167500 Sobic002G167500 Sobic008G172300--Sobic002G167500 Sobic001G090500--Sobic003G381200 Sobic001G090500--Sobic001G159400 Sobic003G106200 Sobic003G106200 Sobic001G090500--Sobic003G106200 Sobic007G193700 Sobic007G193700 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic002G031400 Sobic002G031400 Sobic001G090500--Sobic002G031400 Sobic010G112000 Sobic010G112000 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G146800 Sobic001G146800 Sobic001G498600--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic001G498600--Sobic004G317100 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic004G263600 Sobic004G263600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic002G316600 Sobic002G316600 Sobic001G072500--Sobic002G316600 Sobic004G314000 Sobic004G314000 Sobic001G072500--Sobic004G314000 Sobic001G072500--Sobic006G131500 Sobic010G206900 Sobic010G206900 Sobic001G072500--Sobic010G206900 Sobic010G139000 Sobic010G139000 Sobic001G072500--Sobic010G139000 Sobic006G153900--Sobic001G498600 Sobic006G153900--Sobic007G065100 Sobic006G153900--Sobic002G425700 Sobic001G178700 Sobic001G178700 Sobic006G153900--Sobic001G178700 Sobic006G153900--Sobic010G112000 Sobic006G153900--Sobic006G131500 Sobic001G291000 Sobic001G291000 Sobic006G153900--Sobic001G291000 Sobic006G153900--Sobic010G000600 Sobic001G384900 Sobic001G384900 Sobic006G153900--Sobic001G384900 Sobic010G079500 Sobic010G079500 Sobic006G119400--Sobic010G079500 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic001G298900 Sobic001G298900 Sobic006G119400--Sobic001G298900
Octagon: transcription factors


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