Gene annotation
Transcriptome id Sobic.004G088200.1,Sobic.004G088200.2
Synonym Sb04g007300
Functional annotation transcription factor S-II, central domain containing protein, expressed
UniProt C5XXZ4
Pfam PF07744 PF07500
Panther DB PTHR11477 PTHR11477:SF17
NCBI CDD KOG1634; Predicted transcription factor DATF1, contains PHD and TFS2M domains
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G11430 : SPOC domain / Transcription elongation factor S-II protein
RAP-DB (Rice) LOC_Os02g11780.1 : transcription factor S-II, central domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020230 , Zm00025a033560 , Zm00025a034595
Brachypodium KQJ93983 , KQJ93982 , KQJ93981 , KQJ93980
Barley HORVU6Hr1G010500.1 , HORVU6Hr1G010500.2
Wheat TraesCS6B02G071500 , TraesCS6A02G052900 , TraesCSU02G132200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.010G167900 expressed protein K14376: poly(A) polymerase
3 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
4 Sobic.006G096900 expressed protein -
5 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
6 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
7 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
8 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
9 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
10 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
11 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
12 Sobic.001G456900 expressed protein -
13 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.001G398800 FHA domain containing protein, putative, expressed -
15 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
16 Sobic.007G078600 YT521-B, putative, expressed -
17 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
18 Sobic.004G158200 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
20 Sobic.003G059750 - K11797: PHIP, PH-interacting protein


Gene co-expression network
sample Sobic004G088200 Sobic004G088200 Sobic003G394300 Sobic003G394300 Sobic004G088200--Sobic003G394300 Sobic010G167900 Sobic010G167900 Sobic004G088200--Sobic010G167900 Sobic005G207500 Sobic005G207500 Sobic004G088200--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic004G088200--Sobic006G096900 Sobic002G153700 Sobic002G153700 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic003G307000 Sobic003G307000 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G394300--Sobic003G307000 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic010G021500 Sobic010G021500 Sobic010G167900--Sobic010G021500 Sobic010G167900--Sobic004G088200 Sobic010G167900--Sobic003G394300 Sobic002G297200 Sobic002G297200 Sobic010G167900--Sobic002G297200 Sobic009G026500 Sobic009G026500 Sobic010G167900--Sobic009G026500 Sobic002G034600 Sobic002G034600 Sobic010G167900--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic010G167900--Sobic002G353600 Sobic002G382600 Sobic002G382600 Sobic010G167900--Sobic002G382600 Sobic010G167900--Sobic005G207500 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic003G360400 Sobic003G360400 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic002G153700--Sobic002G071500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic003G194500 Sobic003G194500 Sobic007G212300--Sobic003G194500 Sobic004G314000 Sobic004G314000 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic007G212300--Sobic003G360400 Sobic007G212300--Sobic003G095900 Sobic001G227400 Sobic001G227400 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic007G212300--Sobic005G008800 Sobic001G154900 Sobic001G154900 Sobic007G212300--Sobic001G154900 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic005G112300 Sobic005G112300 Sobic001G311500--Sobic005G112300 Sobic001G311500--Sobic003G059750 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic003G307000--Sobic002G153700 Sobic003G307000--Sobic003G445400 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G307000--Sobic003G394300 Sobic003G307000--Sobic010G065300 Sobic001G540400 Sobic001G540400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200
Octagon: transcription factors


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