Gene annotation
Transcriptome id Sobic.003G133900.1
Synonym Sb03g011390
Functional annotation exonuclease, putative, expressed
UniProt C5XHC7
Pfam PF06839 PF00929
Panther DB PTHR23044 PTHR23044:SF35
NCBI CDD KOG0542; Predicted exonuclease
KEGG Orthology K18417; ERI1 exoribonuclease 2
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G15140 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os01g17279.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a024162
Brachypodium KQK03954
Barley HORVU3Hr1G042890.1 , HORVU3Hr1G042890.2 , HORVU3Hr1G042890.3 , HORVU3Hr1G042890.4 , HORVU3Hr1G042890.5 , HORVU3Hr1G042890.6
Wheat -
Populus -


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cDNA sequences
Sobic.003G133900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
2 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
3 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
4 Sobic.001G398800 FHA domain containing protein, putative, expressed -
5 Sobic.007G183900 ubiquitin family protein, putative, expressed -
6 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
7 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
8 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
9 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.004G155600 dnaJ domain containing protein, expressed -
11 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
12 Sobic.009G251200 expressed protein -
13 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
14 Sobic.003G266001 - -
15 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
16 Sobic.009G223600 OsFBX53 - F-box domain containing protein, expressed -
17 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.006G118700 MYB family transcription factor, putative, expressed -
19 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
20 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein


Gene co-expression network
sample Sobic003G133900 Sobic003G133900 Sobic004G309900 Sobic004G309900 Sobic003G133900--Sobic004G309900 Sobic001G493200 Sobic001G493200 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic006G210000 Sobic006G210000 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic004G309900--Sobic003G133900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic001G384300 Sobic001G384300 Sobic002G083500--Sobic001G384300 Sobic002G154000 Sobic002G154000 Sobic002G083500--Sobic002G154000 Sobic002G083500--Sobic001G433800 Sobic002G083500--Sobic001G493200 Sobic002G260400 Sobic002G260400 Sobic002G083500--Sobic002G260400 Sobic002G083500--Sobic003G133900 Sobic006G234700 Sobic006G234700 Sobic002G083500--Sobic006G234700 Sobic007G090430 Sobic007G090430 Sobic002G083500--Sobic007G090430 Sobic002G083500--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic001G398800--Sobic004G048800 Sobic001G026200 Sobic001G026200 Sobic001G398800--Sobic001G026200 Sobic003G360400 Sobic003G360400 Sobic001G398800--Sobic003G360400 Sobic001G134300 Sobic001G134300 Sobic001G398800--Sobic001G134300 Sobic002G071500 Sobic002G071500 Sobic001G398800--Sobic002G071500 Sobic010G001100 Sobic010G001100 Sobic001G398800--Sobic010G001100 Sobic001G398800--Sobic007G090430 Sobic010G065300 Sobic010G065300 Sobic001G398800--Sobic010G065300 Sobic004G039200 Sobic004G039200 Sobic001G398800--Sobic004G039200 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic009G056200 Sobic009G056200 Sobic005G172500--Sobic009G056200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic002G045600 Sobic002G045600 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic003G139900 Sobic003G139900 Sobic004G200200--Sobic003G139900 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic004G200200--Sobic009G191000 Sobic001G058700 Sobic001G058700 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic004G200200--Sobic003G422500 Sobic008G173100 Sobic008G173100 Sobic007G071200--Sobic008G173100 Sobic009G050900 Sobic009G050900 Sobic007G071200--Sobic009G050900 Sobic007G071200--Sobic001G493200 Sobic007G071200--Sobic006G118700 Sobic007G071200--Sobic005G191900 Sobic009G177500 Sobic009G177500 Sobic007G071200--Sobic009G177500 Sobic007G071200--Sobic002G083500 Sobic007G071200--Sobic003G133900 Sobic003G401100 Sobic003G401100 Sobic007G071200--Sobic003G401100
Octagon: transcription factors


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