Gene annotation
Transcriptome id Sobic.009G251200.1,Sobic.009G251200.2
Synonym Sb09g030180
Functional annotation expressed protein
UniProt C5YWM2
Pfam -
Panther DB PTHR34462 PTHR34462:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27620 : -
RAP-DB (Rice) LOC_Os05g51000.3 : expressed protein
MaizeGDB (Corn) Zm00025a020870 , Zm00025a031767
Brachypodium KQK04619 , PNT70625 , KQK00068 , KQK00067
Barley HORVU1Hr1G093400.4 , HORVU1Hr1G093400.3 , HORVU1Hr1G093400.2 , HORVU1Hr1G093400.1
Wheat TraesCS1D02G437200 , TraesCS6D02G186400 , TraesCS6D02G186400 , TraesCS6B02G235700 , TraesCS6B02G235700 , TraesCS1B02G462400 , TraesCS1A02G427500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G298100 expressed protein -
2 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
3 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
4 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
5 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
6 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
7 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
8 Sobic.001G393900 FAD binding domain containing protein, expressed -
9 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
10 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
11 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
13 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
14 Sobic.002G309200 FAR1 family protein, expressed -
15 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
16 Sobic.007G173500 growth regulator related protein, putative, expressed -
17 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
18 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
19 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
20 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1


Gene co-expression network
sample Sobic009G251200 Sobic009G251200 Sobic002G298100 Sobic002G298100 Sobic009G251200--Sobic002G298100 Sobic003G133900 Sobic003G133900 Sobic009G251200--Sobic003G133900 Sobic005G160100 Sobic005G160100 Sobic009G251200--Sobic005G160100 Sobic001G081000 Sobic001G081000 Sobic009G251200--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic009G251200--Sobic006G226300 Sobic004G309900 Sobic004G309900 Sobic009G251200--Sobic004G309900 Sobic006G185200 Sobic006G185200 Sobic009G251200--Sobic006G185200 Sobic001G393900 Sobic001G393900 Sobic009G251200--Sobic001G393900 Sobic008G014500 Sobic008G014500 Sobic009G251200--Sobic008G014500 Sobic002G298100--Sobic009G251200 Sobic010G098200 Sobic010G098200 Sobic002G298100--Sobic010G098200 Sobic010G140400 Sobic010G140400 Sobic002G298100--Sobic010G140400 Sobic004G018300 Sobic004G018300 Sobic002G298100--Sobic004G018300 Sobic008G051200 Sobic008G051200 Sobic002G298100--Sobic008G051200 Sobic004G171200 Sobic004G171200 Sobic002G298100--Sobic004G171200 Sobic002G298100--Sobic005G160100 Sobic003G434700 Sobic003G434700 Sobic002G298100--Sobic003G434700 Sobic001G219600 Sobic001G219600 Sobic002G298100--Sobic001G219600 Sobic003G133900--Sobic004G309900 Sobic001G493200 Sobic001G493200 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic006G210000 Sobic006G210000 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic002G275600 Sobic002G275600 Sobic005G160100--Sobic002G275600 Sobic001G214600 Sobic001G214600 Sobic005G160100--Sobic001G214600 Sobic001G089600 Sobic001G089600 Sobic005G160100--Sobic001G089600 Sobic004G260100 Sobic004G260100 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic005G160100--Sobic009G251200 Sobic003G260400 Sobic003G260400 Sobic005G160100--Sobic003G260400 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic008G131000 Sobic008G131000 Sobic001G081000--Sobic008G131000 Sobic003G141500 Sobic003G141500 Sobic001G081000--Sobic003G141500 Sobic001G081000--Sobic008G014500 Sobic003G258900 Sobic003G258900 Sobic001G081000--Sobic003G258900 Sobic008G083000 Sobic008G083000 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic004G309900--Sobic003G133900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic002G378100 Sobic002G378100 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600
Octagon: transcription factors


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