Gene annotation
Transcriptome id Sobic.006G226300.1
Synonym Sb06g029510
Functional annotation SDA1, putative, expressed
UniProt A0A1B6PNC5
Pfam PF05285 PF08158
Panther DB PTHR12730:SF0 PTHR12730
NCBI CDD -
KEGG Orthology K14856; SDA1, protein SDA1
Gene Ontology GO:0000055; ribosomal large subunit export from nucleus


Orthologs (automatic annotation)
TAIR AT1G13160 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os04g53770.1 : SDA1, putative, expressed
MaizeGDB (Corn) Zm00025a009678
Brachypodium KQJ84784
Barley HORVU2Hr1G108050.8 , HORVU2Hr1G108050.4 , HORVU2Hr1G108050.5 , HORVU2Hr1G108050.6 , HORVU2Hr1G108050.7 , HORVU2Hr1G108050.1 , HORVU2Hr1G108050.2 , HORVU2Hr1G108050.3
Wheat TraesCS5B02G265000 , TraesCS2A02G481000 , TraesCS2A02G481000 , TraesCS2D02G481100 , TraesCS2B02G506700 , TraesCS2B02G506700 , TraesCS5A02G265300 , TraesCS5D02G273200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
2 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
3 Sobic.005G157100 THUMP domain-containing protein, putative, expressed K06963: TAN1, tRNA acetyltransferase TAN1
4 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
5 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
6 Sobic.008G147200 tubulin, putative, expressed -
7 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
8 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
9 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
10 Sobic.009G251200 expressed protein -
11 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
12 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
13 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
14 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
15 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
16 Sobic.010G215900 type II intron maturase protein, putative, expressed -
17 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
18 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
19 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
20 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G226300 Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic002G142600--Sobic006G226300 Sobic009G235200 Sobic009G235200 Sobic002G142600--Sobic009G235200 Sobic005G199200 Sobic005G199200 Sobic002G142600--Sobic005G199200 Sobic001G334100 Sobic001G334100 Sobic002G142600--Sobic001G334100 Sobic003G184400 Sobic003G184400 Sobic002G142600--Sobic003G184400 Sobic009G074700 Sobic009G074700 Sobic002G142600--Sobic009G074700 Sobic006G131200 Sobic006G131200 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic010G209400 Sobic010G209400 Sobic005G157100--Sobic010G209400 Sobic005G157100--Sobic006G226300 Sobic008G014500 Sobic008G014500 Sobic005G157100--Sobic008G014500 Sobic008G131000 Sobic008G131000 Sobic005G157100--Sobic008G131000 Sobic001G167200 Sobic001G167200 Sobic005G157100--Sobic001G167200 Sobic002G158700 Sobic002G158700 Sobic005G157100--Sobic002G158700 Sobic001G511500 Sobic001G511500 Sobic005G157100--Sobic001G511500 Sobic005G157100--Sobic003G258900 Sobic010G065300 Sobic010G065300 Sobic005G157100--Sobic010G065300 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic005G137700--Sobic008G147200 Sobic005G137700--Sobic010G007100 Sobic005G137700--Sobic003G042400 Sobic005G137700--Sobic006G226300 Sobic009G143800 Sobic009G143800 Sobic005G137700--Sobic009G143800 Sobic005G137700--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic005G137700--Sobic010G118000 Sobic007G220300 Sobic007G220300 Sobic005G137700--Sobic007G220300 Sobic005G137700--Sobic008G131000 Sobic002G396000 Sobic002G396000 Sobic003G258900--Sobic002G396000 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic001G081000 Sobic001G081000 Sobic003G258900--Sobic001G081000 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic009G046700 Sobic009G046700 Sobic003G258900--Sobic009G046700 Sobic008G173100 Sobic008G173100 Sobic001G246500--Sobic008G173100 Sobic001G246500--Sobic010G096000 Sobic001G246500--Sobic009G074700 Sobic002G259800 Sobic002G259800 Sobic001G246500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic001G246500--Sobic001G306900 Sobic009G195200 Sobic009G195200 Sobic001G246500--Sobic009G195200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic001G246500--Sobic009G151200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.