Gene annotation
Transcriptome id Sobic.009G235200.1
Synonym Sb09g028780
Functional annotation ribosomal RNA large subunit methyltransferase J, putative, expressed
UniProt C5YVX0
Pfam PF11861 PF01728 PF07780
Panther DB PTHR10920 PTHR10920:SF13
NCBI CDD -
KEGG Orthology K14857; SPB1, AdoMet-dependent rRNA methyltransferase SPB1
Gene Ontology GO:0008168; methyltransferase activity GO:0006364rRNA processing GO:0005634nucleus GO:0001510RNA methylation GO:0008649rRNA methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G25730 : FtsJ-like methyltransferase family protein
RAP-DB (Rice) LOC_Os05g49230.1 : ribosomal RNA large subunit methyltransferase J, putative, expressed
MaizeGDB (Corn) Zm00025a044604 , Zm00025a036634
Brachypodium KQK04814
Barley HORVU1Hr1G089440.8 , HORVU1Hr1G089440.9 , HORVU1Hr1G089440.1 , HORVU1Hr1G089440.2 , HORVU1Hr1G089440.3 , HORVU1Hr1G089440.4 , HORVU1Hr1G089440.5 , HORVU1Hr1G089440.6 , HORVU1Hr1G089440.7
Wheat TraesCS1D02G373400 , TraesCS7D02G422700 , TraesCS7D02G422700 , TraesCS7A02G430800 , TraesCS7A02G430800 , TraesCS7A02G430800 , TraesCS7D02G422700 , TraesCS7B02G331000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
2 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
3 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
4 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
5 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
6 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
7 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
8 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
9 Sobic.002G263700 bromodomain protein 103, putative, expressed -
10 Sobic.002G112600 zinc finger family protein, putative, expressed -
11 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
12 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
13 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
14 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
15 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
16 Sobic.006G059500 expressed protein K13150: COIL, coilin
17 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
18 Sobic.010G215900 type II intron maturase protein, putative, expressed -
19 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1


Gene co-expression network
sample Sobic009G235200 Sobic009G235200 Sobic008G163500 Sobic008G163500 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic002G142600--Sobic006G226300 Sobic002G142600--Sobic009G235200 Sobic002G142600--Sobic005G199200 Sobic001G334100 Sobic001G334100 Sobic002G142600--Sobic001G334100 Sobic003G184400 Sobic003G184400 Sobic002G142600--Sobic003G184400 Sobic009G074700 Sobic009G074700 Sobic002G142600--Sobic009G074700 Sobic006G131200 Sobic006G131200 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic003G123100 Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic009G142000 Sobic009G142000 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic002G112600 Sobic002G112600 Sobic007G014800--Sobic002G112600 Sobic007G014800--Sobic001G346900 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic007G014800--Sobic006G226300 Sobic007G014800--Sobic008G163500 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic002G399200--Sobic008G163500 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic010G269300 Sobic010G269300 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic002G263700--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic006G280100 Sobic006G280100 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900
Octagon: transcription factors


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